SRR3551544_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551544_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	677550
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13635	2.0123976090325435	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTC	1869	0.27584680097409786	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGC	1600	0.2361449339532138	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCG	1590	0.2346690281160062	No Hit
GCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCCGTCTTCTGC	1060	0.15644601874400413	Illumina PCR Primer Index 6 (95% over 23bp)
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	819	0.1208766880673013	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	757	0.11172607187661426	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGCATAACTCGTATGCC	688	0.10154232159988191	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	678	0.10006641576267433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	35	1.2109376E-7	45.000004	1
CATAGCG	20	7.0312334E-4	45.000004	1
CTCGAAT	20	7.0312334E-4	45.000004	43
CAGTACG	20	7.0312334E-4	45.000004	1
TATCGCG	35	1.2109376E-7	45.000004	1
TATCACG	25	3.889104E-5	45.0	1
GTTAACG	25	3.889104E-5	45.0	1
ACATCGG	25	3.889104E-5	45.0	2
CGATCTC	25	3.889104E-5	45.0	11
CGTTTTT	5400	0.0	42.583332	1
ATAACGC	80	0.0	39.375004	11
ACGGGCT	190	0.0	39.078945	5
TTTAGCG	35	6.2444924E-6	38.57143	1
TCGTAAG	35	6.2444924E-6	38.57143	1
ATAACGG	35	6.2444924E-6	38.57143	2
CGTTTAT	70	0.0	38.57143	39
CACTAGG	65	9.094947E-12	38.076927	2
TAGGGTC	125	0.0	37.800003	5
GGCGATA	245	0.0	37.65306	8
TGGGCGA	300	0.0	37.500004	6