SRR3551539_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551539_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	774846
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9816	1.2668323770142713	No Hit
GCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	1978	0.2552765323690127	No Hit
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	1305	0.16842056357005133	No Hit
CCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGC	1169	0.15086868874589274	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1164	0.15022339923029868	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCC	1054	0.1360270298872292	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTC	896	0.11563588119445671	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	781	0.10079422233579317	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATTCG	20	7.031861E-4	45.000004	15
CGTTTTT	3835	0.0	42.59453	1
CGGTCTA	75	0.0	42.000004	31
TACGAAT	125	0.0	41.399998	12
TACCGGT	55	6.002665E-11	40.909092	40
CGGTATT	50	1.0804797E-9	40.5	43
GCGTTTA	85	0.0	39.705883	32
TAGACGG	75	0.0	39.000004	2
TCGCGTA	35	6.2456547E-6	38.571426	30
CGAATAT	135	0.0	38.333332	14
GCTACGA	135	0.0	38.333332	10
CTCACGA	90	0.0	37.5	24
GCCCGAA	90	0.0	37.5	25
GATCGCC	30	1.1395785E-4	37.499996	30
ATAAGCG	30	1.1395785E-4	37.499996	1
ATAACGC	55	2.746674E-9	36.81818	11
TTACACG	110	0.0	36.81818	34
CCCTCGT	215	0.0	36.627907	14
TGTTCGG	25	0.002106686	36.0	2
GTGCGTA	25	0.002106686	36.0	16