##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551538_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 256990 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.344632086851625 33.0 31.0 34.0 31.0 34.0 2 32.45614226234484 34.0 31.0 34.0 31.0 34.0 3 32.47455543017238 34.0 31.0 34.0 31.0 34.0 4 35.99708548970777 37.0 35.0 37.0 35.0 37.0 5 36.091431573212965 37.0 35.0 37.0 35.0 37.0 6 36.10828047783961 37.0 36.0 37.0 35.0 37.0 7 36.23212576364839 37.0 37.0 37.0 35.0 37.0 8 36.144098992178684 37.0 37.0 37.0 35.0 37.0 9 38.011665823572905 39.0 39.0 39.0 35.0 39.0 10 37.696564068640804 39.0 37.0 39.0 35.0 39.0 11 37.683905988559864 39.0 37.0 39.0 35.0 39.0 12 37.62143274057356 39.0 37.0 39.0 35.0 39.0 13 37.58243900540877 39.0 37.0 39.0 35.0 39.0 14 38.8605548854041 40.0 38.0 41.0 35.0 41.0 15 38.928199540838165 40.0 38.0 41.0 35.0 41.0 16 38.959352503988484 40.0 38.0 41.0 35.0 41.0 17 38.93682244445309 40.0 38.0 41.0 35.0 41.0 18 38.8486361337017 40.0 38.0 41.0 35.0 41.0 19 38.77692906338768 40.0 38.0 41.0 35.0 41.0 20 38.67799525273357 40.0 38.0 41.0 35.0 41.0 21 38.58354410677458 40.0 38.0 41.0 35.0 41.0 22 38.581045955095526 40.0 38.0 41.0 35.0 41.0 23 38.534063582240556 40.0 37.0 41.0 35.0 41.0 24 38.46880034242577 40.0 37.0 41.0 35.0 41.0 25 38.36120471613682 40.0 37.0 41.0 35.0 41.0 26 38.36638390598856 40.0 37.0 41.0 35.0 41.0 27 38.35916572629285 40.0 37.0 41.0 35.0 41.0 28 38.310381726915445 40.0 37.0 41.0 35.0 41.0 29 38.22986886649286 40.0 37.0 41.0 34.0 41.0 30 38.082365072570916 40.0 37.0 41.0 34.0 41.0 31 38.052503988482044 40.0 37.0 41.0 34.0 41.0 32 37.919592202031204 40.0 36.0 41.0 34.0 41.0 33 37.80776294797463 40.0 36.0 41.0 34.0 41.0 34 37.65745359741624 40.0 36.0 41.0 33.0 41.0 35 37.558103428148954 40.0 36.0 41.0 33.0 41.0 36 37.477512743686525 40.0 36.0 41.0 33.0 41.0 37 37.42510992645628 40.0 36.0 41.0 33.0 41.0 38 37.276567181602395 40.0 35.0 41.0 33.0 41.0 39 37.27924821977509 40.0 35.0 41.0 33.0 41.0 40 37.21267364488891 40.0 35.0 41.0 33.0 41.0 41 37.133849566130976 40.0 35.0 41.0 33.0 41.0 42 37.05853924277209 40.0 35.0 41.0 32.0 41.0 43 37.057799914393556 40.0 35.0 41.0 33.0 41.0 44 36.98349352114868 39.0 35.0 41.0 32.0 41.0 45 36.87031791120277 39.0 35.0 41.0 32.0 41.0 46 36.79954083816491 39.0 35.0 41.0 32.0 41.0 47 36.75237168761431 39.0 35.0 41.0 32.0 41.0 48 36.71897350091443 39.0 35.0 41.0 32.0 41.0 49 36.673855013813764 39.0 35.0 41.0 32.0 41.0 50 36.5965134830149 39.0 35.0 41.0 31.0 41.0 51 35.78369197245029 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 5.0 10 0.0 11 3.0 12 7.0 13 3.0 14 9.0 15 11.0 16 15.0 17 26.0 18 38.0 19 82.0 20 116.0 21 192.0 22 312.0 23 485.0 24 777.0 25 1304.0 26 1918.0 27 2407.0 28 2495.0 29 2524.0 30 2878.0 31 3296.0 32 4229.0 33 6149.0 34 12377.0 35 18947.0 36 16073.0 37 25588.0 38 50856.0 39 103739.0 40 127.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.42581423401688 21.108992567804194 21.540526868749758 13.924666329429161 2 34.69084400171213 24.763220358768823 22.859644344137905 17.686291295381142 3 31.762325382310596 23.9067668002646 27.041130005058562 17.28977781236624 4 29.108136503365888 25.902564302112925 26.71582551850267 18.273473676018522 5 24.937546208023658 29.08362193081443 25.60761119109693 20.371220670064982 6 25.340674734425463 34.606794038678544 25.69321763492743 14.359313591968558 7 75.4675279193743 6.8827580839721385 12.216428654811471 5.433285341842095 8 74.77255924355033 6.664850772403595 11.995408381649092 6.567181602396981 9 68.34623915327444 8.711623020350986 14.780730767734154 8.161407058640414 10 37.28938869216701 22.674034009105412 23.393906377680064 16.64267092104751 11 28.35441067745827 23.802093466671856 26.327483559671585 21.516012296198294 12 25.762870150589517 21.646367562940192 32.073232421495 20.51752986497529 13 24.00210124907584 23.297404568271137 33.01645978442741 19.68403439822561 14 20.16226312307872 27.14424685785439 31.271255690882917 21.422234328183976 15 19.124090431534302 24.91886843846064 35.513444102883376 20.443597027121676 16 20.591851823028133 24.08770769290634 32.75964045293591 22.560800031129617 17 21.02027316237986 23.358496439550176 29.88131833923499 25.739912058834975 18 20.619090236974202 24.691233121911356 32.443674851161525 22.246001789952917 19 22.765866376123583 24.91147515467528 29.985213432429276 22.337445036771857 20 23.181057628701506 25.821238180473948 29.864975290867353 21.132728899957197 21 22.577921319895715 26.03291956885482 30.191058017821703 21.19810109342776 22 20.82260010117125 24.99708159850578 28.647807307677343 25.53251099264563 23 20.612475193587297 25.85003307521693 29.68675823962022 23.85073349157555 24 21.925755865987004 24.882291139733066 29.766527880462274 23.425425113817656 25 20.872796606871862 26.56834896299467 28.436125919296472 24.122728510836996 26 19.62566636834118 28.05517724425075 28.72563134752325 23.59352503988482 27 21.895793610646326 27.404957391338186 29.062220319856802 21.637028678158686 28 19.493754620802367 26.93918051286042 30.337367212732012 23.2296976536052 29 19.99221759601541 27.237635705669483 29.61788396435659 23.15226273395852 30 21.381765827464104 27.73298571928869 28.008093700143977 22.877154753103234 31 22.415658196816995 29.246274174092378 24.99396863691194 23.344098992178683 32 21.031946768356747 28.827191719522162 26.45044554262812 23.690415969492975 33 21.18175804506012 26.720494960893422 25.707615082298922 26.390131911747538 34 20.870461885676487 26.291684501342466 27.430639324487334 25.40721428849372 35 20.861901241293435 26.146153546830615 27.224405618895673 25.76753959298027 36 21.679831900073932 27.920930775516556 25.669870422973656 24.729366901435853 37 21.404334799019416 28.252072065060897 27.56955523561228 22.774037900307405 38 19.904276430989533 27.851278259854467 26.52048717848944 25.723958130666563 39 22.52305537180435 23.741390715592043 28.007315459745513 25.728238452858086 40 22.72812171679832 24.133234756216197 28.359469240048252 24.779174286937238 41 20.471224561266975 25.74925094361648 26.154325071014433 27.625199424102103 42 20.24125452352232 26.994046460951786 26.669131094595123 26.095567920930772 43 21.63235923576793 25.644577610023738 27.794077590567728 24.92898556364061 44 20.700416358613175 25.78349352114868 27.971516401416395 25.544573718821745 45 21.671660375890113 23.793143702089576 28.07229853301685 26.462897389003466 46 22.730456437993695 24.738316666018136 27.878127553601306 24.653099342386863 47 20.873963967469553 25.28658702673256 29.517101832756136 24.322347173041752 48 19.951749095295536 24.235573368613565 28.86804934044126 26.944628195649635 49 20.99614771002763 23.35810731935095 30.665784660881744 24.97996030973968 50 20.574730534262034 22.875598272306316 30.03969026032141 26.50998093311024 51 20.298455192809058 23.409860305848476 26.761741702011747 29.529942799330712 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 195.0 1 428.0 2 661.0 3 1912.0 4 3163.0 5 2068.5 6 974.0 7 972.5 8 971.0 9 981.0 10 991.0 11 956.0 12 921.0 13 902.0 14 883.0 15 922.0 16 961.0 17 945.5 18 930.0 19 927.5 20 925.0 21 908.0 22 891.0 23 967.5 24 1044.0 25 1295.0 26 1766.0 27 1986.0 28 2376.0 29 2766.0 30 3227.0 31 3688.0 32 3987.5 33 4287.0 34 4642.0 35 4997.0 36 5486.0 37 5975.0 38 6606.5 39 7238.0 40 8638.5 41 10039.0 42 11602.5 43 13166.0 44 15094.0 45 17022.0 46 19838.0 47 22654.0 48 26014.0 49 29374.0 50 28398.0 51 27422.0 52 23164.0 53 18906.0 54 16380.0 55 13854.0 56 12725.5 57 11597.0 58 11260.0 59 10923.0 60 9872.0 61 8821.0 62 8242.5 63 7664.0 64 6859.0 65 6054.0 66 5025.0 67 3996.0 68 3566.5 69 3137.0 70 2713.5 71 2290.0 72 2043.5 73 1797.0 74 1447.5 75 860.5 76 623.0 77 428.0 78 233.0 79 210.5 80 188.0 81 128.5 82 69.0 83 57.5 84 46.0 85 26.0 86 6.0 87 10.5 88 15.0 89 8.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 256990.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.489539838245825 #Duplication Level Percentage of deduplicated Percentage of total 1 72.96628587228322 28.814050528023614 2 9.941819117936621 7.8519572424478445 3 3.739578787534221 4.430227365257749 4 2.144576054565242 3.3875328617160876 5 1.5296917990051264 3.020341261852543 6 1.2527473852325408 2.968225066583923 7 0.9997983844844462 2.7637104694018646 8 0.961806045549431 3.038502252191195 9 0.7928401186166439 2.817800230452436 >10 5.562878209306334 34.31501880753418 >50 0.06098770143200664 1.6657277808982014 >100 0.04199153213351277 2.7479178371774076 >500 0.0029993951523937692 0.9053125862999707 >1k 0.0019995967682625124 1.2736757101629765 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2001 0.7786295186583135 No Hit GCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC 1225 0.4766722440561889 TruSeq Adapter, Index 15 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC 866 0.3369780925327834 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGCT 861 0.33503249153663567 TruSeq Adapter, Index 14 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCC 566 0.2202420327639208 No Hit TCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC 364 0.1416397525195533 TruSeq Adapter, Index 15 (95% over 21bp) CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 361 0.14047239192186467 No Hit ACTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTGC 351 0.13658118992956925 TruSeq Adapter, Index 14 (95% over 22bp) GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 280 0.10895365578427177 No Hit GCCTGTCTCTTATACACATCTGACGCAAATCGCCTCGTATGCCGTCTTCTG 271 0.10545157399120589 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.78240398459084E-4 0.0 0.0 0.34514961671660377 0.0 2 7.78240398459084E-4 0.0 0.0 1.4848826802599322 0.0 3 7.78240398459084E-4 0.0 0.0 2.0638935367134907 0.0 4 7.78240398459084E-4 0.0 0.0 2.725008755204483 0.0 5 7.78240398459084E-4 0.0 0.0 4.52896999883264 0.0 6 7.78240398459084E-4 0.0 0.0 5.484260087941165 0.0 7 7.78240398459084E-4 0.0 0.0 6.463675629401922 0.0 8 7.78240398459084E-4 0.0 0.0 7.908089808941982 0.0 9 7.78240398459084E-4 0.0 0.0 8.468033775633293 0.0 10 7.78240398459084E-4 0.0 0.0 9.766917000661504 0.0 11 7.78240398459084E-4 0.0 0.0 11.692672866648508 0.0 12 7.78240398459084E-4 0.0 0.0 13.180279388303047 0.0 13 7.78240398459084E-4 0.0 0.0 13.801315226273395 0.0 14 7.78240398459084E-4 0.0 0.0 14.05307599517491 0.0 15 7.78240398459084E-4 0.0 0.0 14.524300556441885 0.0 16 7.78240398459084E-4 0.0 0.0 15.445737188217441 0.0 17 7.78240398459084E-4 0.0 0.0 16.548503832833962 0.0 18 7.78240398459084E-4 0.0 0.0 17.820148643916106 0.0 19 7.78240398459084E-4 0.0 0.0 18.528347406513873 0.0 20 7.78240398459084E-4 0.0 0.0 19.21709015915016 0.0 21 7.78240398459084E-4 0.0 0.0 20.035020817930658 0.0 22 7.78240398459084E-4 0.0 0.0 20.89030701583719 0.0 23 7.78240398459084E-4 0.0 0.0 21.720300400793807 0.0 24 7.78240398459084E-4 0.0 0.0 22.408654033230864 0.0 25 7.78240398459084E-4 0.0 0.0 23.020740106618934 0.0 26 7.78240398459084E-4 0.0 0.0 23.563173664344916 0.0 27 7.78240398459084E-4 0.0 0.0 24.102494260477062 0.0 28 7.78240398459084E-4 0.0 0.0 24.66477294836375 0.0 29 7.78240398459084E-4 0.0 0.0 25.20059146270283 0.0 30 7.78240398459084E-4 0.0 0.0 25.77882407875793 0.0 31 7.78240398459084E-4 0.0 0.0 26.34732868983229 0.0 32 7.78240398459084E-4 0.0 0.0 26.897933771742093 0.0 33 7.78240398459084E-4 0.0 0.0 27.446593252655745 0.0 34 7.78240398459084E-4 0.0 0.0 27.99408537297171 0.0 35 7.78240398459084E-4 0.0 0.0 28.566092065839136 0.0 36 7.78240398459084E-4 0.0 0.0 29.068446243044477 0.0 37 7.78240398459084E-4 0.0 0.0 29.587143468617455 0.0 38 7.78240398459084E-4 0.0 0.0 30.099614771002763 0.0 39 7.78240398459084E-4 0.0 0.0 30.60313630880579 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 35 1.2070086E-7 45.000004 25 CGACGGT 30 2.1589021E-6 45.000004 28 CACGACG 30 2.1589021E-6 45.000004 26 TACGGGT 30 2.1589021E-6 45.000004 4 CGCGAGG 30 2.1589021E-6 45.000004 2 ACGCATG 25 3.8823255E-5 45.0 1 TTATGCG 20 7.023053E-4 45.0 1 GGGTAAC 20 7.023053E-4 45.0 7 CCGTGAT 20 7.023053E-4 45.0 27 GTGATCC 20 7.023053E-4 45.0 29 ACCTAGT 25 3.8823255E-5 45.0 20 CACTAGG 20 7.023053E-4 45.0 2 TCGAGTA 25 3.8823255E-5 45.0 26 GACGAGG 20 7.023053E-4 45.0 2 ATTGCGG 40 6.7793735E-9 45.0 2 TAGTCGA 25 3.8823255E-5 45.0 23 CCCGATG 20 7.023053E-4 45.0 15 TAGGGTG 65 0.0 44.999996 5 AGGGATA 95 0.0 42.63158 6 GTGTTAG 65 0.0 41.53846 1 >>END_MODULE