SRR3551536_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551536_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	643429
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7080	1.1003545068686678	No Hit
GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	1275	0.1981570616182982	No Hit
CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	1071	0.1664519317593705	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCC	885	0.13754431335858347	No Hit
CGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTG	766	0.11904965427420897	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	755	0.11734006393867855	No Hit
CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT	741	0.11516422169345801	TruSeq Adapter, Index 13 (95% over 22bp)
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	661	0.10273083743505498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	20	7.030968E-4	45.000004	1
CGGTCTA	30	2.1640062E-6	45.000004	31
GATTCGT	20	7.030968E-4	45.000004	11
CGTTTAT	20	7.030968E-4	45.000004	39
GTTAGCG	25	3.888884E-5	45.0	1
GCGTAAG	50	2.1827873E-11	45.0	1
CGTTTTT	2800	0.0	41.785713	1
TCGGCGT	145	0.0	40.344826	4
GCTAGCG	45	1.925946E-8	40.0	1
TAGTGCG	40	3.4550612E-7	39.375004	1
CGTTTGG	40	3.4550612E-7	39.375004	2
AATGGGC	155	0.0	39.193546	4
CGACGGT	35	6.2440013E-6	38.57143	28
CACGACG	35	6.2440013E-6	38.57143	26
AAATGCG	35	6.2440013E-6	38.57143	1
ACGGTCT	35	6.2440013E-6	38.57143	30
CGTAAGG	100	0.0	38.25	2
ATGGGCG	155	0.0	37.741936	5
CGTTCAT	60	1.546141E-10	37.500004	17
TACGAAT	60	1.546141E-10	37.500004	12