##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551536_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 643429 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.419872278060204 33.0 31.0 34.0 31.0 34.0 2 32.54759888037375 34.0 31.0 34.0 31.0 34.0 3 32.536578239401706 34.0 31.0 34.0 31.0 34.0 4 36.032485324721144 37.0 35.0 37.0 35.0 37.0 5 36.12977655654315 37.0 35.0 37.0 35.0 37.0 6 36.148064510614226 37.0 36.0 37.0 35.0 37.0 7 36.26486216816463 37.0 37.0 37.0 35.0 37.0 8 36.19129694185372 37.0 37.0 37.0 35.0 37.0 9 38.0530625756688 39.0 39.0 39.0 35.0 39.0 10 37.71782434425554 39.0 37.0 39.0 35.0 39.0 11 37.72432078753056 39.0 37.0 39.0 35.0 39.0 12 37.68447956184754 39.0 37.0 39.0 35.0 39.0 13 37.6754125163771 39.0 37.0 39.0 35.0 39.0 14 39.024992656532426 40.0 39.0 41.0 35.0 41.0 15 39.09196974335941 40.0 39.0 41.0 35.0 41.0 16 39.105344956475385 40.0 39.0 41.0 35.0 41.0 17 39.065247292242034 40.0 38.0 41.0 35.0 41.0 18 38.95447516353786 40.0 38.0 41.0 35.0 41.0 19 38.848956139682855 40.0 38.0 41.0 35.0 41.0 20 38.74799084281249 40.0 38.0 41.0 35.0 41.0 21 38.65216830450601 40.0 38.0 41.0 35.0 41.0 22 38.651723811018776 40.0 38.0 41.0 35.0 41.0 23 38.617897234970755 40.0 38.0 41.0 35.0 41.0 24 38.54476562293586 40.0 38.0 41.0 35.0 41.0 25 38.422742835650865 40.0 37.0 41.0 35.0 41.0 26 38.446936647244684 40.0 37.0 41.0 35.0 41.0 27 38.439970843713915 40.0 37.0 41.0 35.0 41.0 28 38.36092715746415 40.0 37.0 41.0 35.0 41.0 29 38.32318406537473 40.0 37.0 41.0 35.0 41.0 30 38.14860380865643 40.0 37.0 41.0 34.0 41.0 31 38.07138627571962 40.0 37.0 41.0 34.0 41.0 32 37.93097140477038 40.0 37.0 41.0 34.0 41.0 33 37.7906606634143 40.0 37.0 41.0 33.0 41.0 34 37.634542428146695 40.0 37.0 41.0 33.0 41.0 35 37.52974298640565 40.0 36.0 41.0 33.0 41.0 36 37.446714400501065 40.0 36.0 41.0 33.0 41.0 37 37.38154170856458 40.0 36.0 41.0 33.0 41.0 38 37.258309774660454 40.0 36.0 41.0 33.0 41.0 39 37.27300292650782 40.0 36.0 41.0 33.0 41.0 40 37.19526629977822 40.0 35.0 41.0 33.0 41.0 41 37.11857252315329 40.0 35.0 41.0 32.0 41.0 42 37.040876304922534 40.0 35.0 41.0 32.0 41.0 43 37.00603951640352 40.0 35.0 41.0 32.0 41.0 44 36.94530554264728 40.0 35.0 41.0 32.0 41.0 45 36.85087865172381 39.0 35.0 41.0 32.0 41.0 46 36.798423757710644 39.0 35.0 41.0 31.0 41.0 47 36.736872288939416 39.0 35.0 41.0 31.0 41.0 48 36.66895648160092 39.0 35.0 41.0 31.0 41.0 49 36.60750447990377 39.0 35.0 41.0 31.0 41.0 50 36.527355776628035 39.0 35.0 41.0 31.0 41.0 51 35.7143196840677 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 13.0 10 9.0 11 23.0 12 10.0 13 15.0 14 20.0 15 28.0 16 45.0 17 58.0 18 128.0 19 211.0 20 290.0 21 543.0 22 873.0 23 1244.0 24 2134.0 25 3448.0 26 5291.0 27 6451.0 28 6585.0 29 6760.0 30 7344.0 31 8455.0 32 10251.0 33 14764.0 34 28161.0 35 41937.0 36 41160.0 37 62088.0 38 121878.0 39 272823.0 40 385.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.16507027193366 20.531558260507378 24.116102942204968 14.187268525354002 2 35.034323911418355 24.17251942327747 23.59607664559726 17.197080019706913 3 32.35368626530666 23.05491359575027 28.378888735198444 16.212511403744625 4 28.92284929650358 25.05591137483701 27.48135380904498 18.53988551961444 5 24.776315646326168 30.16976232031817 25.546408383831004 19.507513649524654 6 25.44647505785409 34.674377437137586 25.29618652563064 14.58296097937768 7 76.98129863590233 6.769822311397217 11.395352090129602 4.853526962570851 8 78.06378015289954 6.236740961318187 10.918687221123076 4.780791664659193 9 71.16542773173109 8.410718198899957 13.426345408739737 6.997508660629223 10 36.09722284820858 25.66996513989889 22.428271029126755 15.804540982765774 11 28.791677092577423 24.393989080380273 26.409440668667404 20.404893158374897 12 25.047052588552894 21.964661213591555 32.22500073823219 20.76328545962336 13 24.297474935074423 22.23104647132784 33.50532848224124 19.966150111356498 14 21.760909129056973 25.30815365797936 31.543651280871703 21.387285932091963 15 20.916526920608177 24.827292521785623 33.63867652841262 20.617504029193586 16 22.996787524342235 23.740148485691506 31.605507367557262 21.657556622409 17 23.081023702692917 24.055490193945253 29.812924192102003 23.05056191125983 18 22.608399683570372 24.634575065780375 31.39320733134503 21.36381791930423 19 23.490548296704063 25.271008922507377 29.54871477661094 21.689728004177617 20 23.227582219638844 25.541124195521185 29.976423195100004 21.25487038973997 21 23.75817689286619 25.617589508710363 29.96119229938346 20.66304129903999 22 22.487795856263862 24.502314940731612 29.360193587792903 23.649695615211623 23 22.07469666427842 25.15646637002684 30.446249702764405 22.322587262930334 24 21.922387707112982 25.386639396110528 30.372581901033367 22.31839099574312 25 22.537373975994242 25.92904578438336 29.179132429529908 22.35444781009249 26 21.832867340452484 25.96976511782963 29.058528602223397 23.13883893949449 27 23.156711929365944 25.48750522590682 29.979531541164604 21.37625130356263 28 21.153538308033987 25.51625742700438 30.325956710064357 23.00424755489728 29 22.760708640735807 25.581066442451306 28.636259789347385 23.021965127465503 30 22.65284903229416 26.20009356121654 29.115100500599134 22.03195690589016 31 23.203337120334954 26.728201557592214 26.994586815328496 23.073874506744335 32 22.49276920996722 27.716500188832022 27.208130189966568 22.582600411234186 33 21.90886640173197 26.810883562910593 27.721784377141844 23.558465658215592 34 21.200008081699767 26.01545780497926 28.387592104179326 24.396942009141647 35 22.505047176922396 26.59454267681438 27.466122913328434 23.434287232934793 36 22.345433606505146 27.717898944561092 26.976092156244125 22.960575292689636 37 21.515971459166437 27.94993697828354 27.115812311847925 23.4182792507021 38 20.525807820287863 28.89922586641261 27.231131950844617 23.34383436245491 39 21.731379841443268 25.795542320908755 28.23745898925911 24.235618848388864 40 21.515660624559974 25.5893035595225 29.876645286426317 23.01839052949121 41 20.75007498884881 26.50688731779264 28.123538105991493 24.61949958736706 42 21.08733053685799 27.138036986209823 27.77866711012404 23.995965366808147 43 21.439816980583718 25.380267286678095 28.9436752151364 24.236240517601786 44 21.770855836463696 25.335662520651077 28.676046618974276 24.21743502391095 45 22.080136269891472 25.029179598681438 28.16689953359267 24.723784597834413 46 21.970567071114296 26.00457859375316 28.38153082935336 23.643323505779193 47 21.432356950028677 25.545631297314852 29.540322242236517 23.481689510419955 48 20.38981767996158 25.840147086935776 29.087591637927417 24.682443595175226 49 21.257357066591652 25.232776265912786 29.836081370283278 23.67378529721228 50 20.41950238487852 24.538060920474518 30.693363214900167 24.349073479746792 51 20.7898618184757 24.728447116931314 28.391322119456845 26.090368945136138 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 363.0 1 889.5 2 1416.0 3 5980.5 4 10545.0 5 6692.0 6 2839.0 7 2714.5 8 2590.0 9 2497.0 10 2404.0 11 2399.5 12 2395.0 13 2459.5 14 2524.0 15 2378.0 16 2232.0 17 2184.0 18 2136.0 19 2068.0 20 2000.0 21 2107.0 22 2214.0 23 2453.0 24 2692.0 25 3061.0 26 4597.5 27 5765.0 28 6822.5 29 7880.0 30 9350.0 31 10820.0 32 12225.5 33 13631.0 34 14540.5 35 15450.0 36 16492.0 37 17534.0 38 19643.0 39 21752.0 40 24762.0 41 27772.0 42 30293.0 43 32814.0 44 36199.0 45 39584.0 46 44673.0 47 49762.0 48 54330.0 49 58898.0 50 59041.0 51 59184.0 52 52725.0 53 46266.0 54 41834.0 55 37402.0 56 34904.0 57 32406.0 58 30679.0 59 28952.0 60 27280.0 61 25608.0 62 24115.0 63 22622.0 64 19946.5 65 17271.0 66 14268.0 67 11265.0 68 9531.5 69 7798.0 70 6520.5 71 5243.0 72 4298.0 73 3353.0 74 2698.0 75 1633.5 76 1224.0 77 930.5 78 637.0 79 506.5 80 376.0 81 287.5 82 199.0 83 142.0 84 85.0 85 56.0 86 27.0 87 18.5 88 10.0 89 13.0 90 16.0 91 8.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 643429.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.79324270546256 #Duplication Level Percentage of deduplicated Percentage of total 1 72.36881186755267 23.73208011878614 2 8.875194002120924 5.820927819392342 3 3.435976317446944 3.3803041592477734 4 2.033911146268328 2.6679416744369133 5 1.4403890308134595 2.361751353887588 6 1.174221734086542 2.3103922989557457 7 1.0067323537997588 2.3109812892317962 8 0.8936450280941113 2.344441463905608 9 0.7945726055931764 2.345095107209593 >10 7.854033637400424 45.777868824313245 >50 0.0734120258022255 1.6357938911831533 >100 0.04385653489295694 2.9755065867502157 >500 0.003813611729822343 0.8633877733855964 >1k 9.534029324555857E-4 0.36674048820615773 >5k 4.7670146622779287E-4 1.1067871511080976 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7080 1.1003545068686678 No Hit GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC 1275 0.1981570616182982 No Hit CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC 1071 0.1664519317593705 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCC 885 0.13754431335858347 No Hit CGCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTG 766 0.11904965427420897 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 755 0.11734006393867855 No Hit CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT 741 0.11516422169345801 TruSeq Adapter, Index 13 (95% over 22bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 661 0.10273083743505498 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.1083460646007564E-4 0.0 0.0 0.11936048888066904 0.0 2 4.6625190969011343E-4 0.0 0.0 0.5968024444033452 0.0 3 4.6625190969011343E-4 0.0 0.0 0.9051503740117403 0.0 4 4.6625190969011343E-4 0.0 0.0 1.2100791229490744 0.0 5 4.6625190969011343E-4 0.0 0.0 2.174443489491459 0.0 6 4.6625190969011343E-4 0.0 0.0 2.881592219188131 0.0 7 4.6625190969011343E-4 0.0 0.0 3.5355882311801303 0.0 8 4.6625190969011343E-4 0.0 0.0 4.496844251657914 0.0 9 4.6625190969011343E-4 0.0 0.0 4.895489634442961 0.0 10 4.6625190969011343E-4 0.0 0.0 5.685475786761243 0.0 11 4.6625190969011343E-4 0.0 0.0 6.78272194756531 0.0 12 4.6625190969011343E-4 0.0 0.0 7.619177873549374 0.0 13 4.6625190969011343E-4 0.0 0.0 7.967312632784658 0.0 14 4.6625190969011343E-4 0.0 0.0 8.114492818943503 0.0 15 4.6625190969011343E-4 0.0 0.0 8.395953555093103 0.0 16 4.6625190969011343E-4 0.0 0.0 8.936339518423944 0.0 17 4.6625190969011343E-4 0.0 0.0 9.556765392918255 0.0 18 4.6625190969011343E-4 0.0 0.0 10.226613969839718 0.0 19 4.6625190969011343E-4 0.0 0.0 10.611738047243751 0.0 20 4.6625190969011343E-4 0.0 0.0 11.006653414751279 0.0 21 4.6625190969011343E-4 0.0 0.0 11.496373337229127 0.0 22 4.6625190969011343E-4 0.0 0.0 12.019663397204665 0.0 23 4.6625190969011343E-4 0.0 0.0 12.565644383451787 0.0 24 4.6625190969011343E-4 0.0 0.0 13.010914957205845 0.0 25 4.6625190969011343E-4 0.0 0.0 13.429298337501107 0.0 26 4.6625190969011343E-4 0.0 0.0 13.807739470866249 0.0 27 4.6625190969011343E-4 0.0 0.0 14.187268525354002 0.0 28 4.6625190969011343E-4 0.0 0.0 14.580318885222768 0.0 29 4.6625190969011343E-4 0.0 0.0 14.979896771827194 0.0 30 4.6625190969011343E-4 0.0 0.0 15.417551897722982 0.0 31 6.216692129201513E-4 0.0 0.0 15.830029420495501 0.0 32 6.216692129201513E-4 0.0 0.0 16.23706733765497 0.0 33 6.216692129201513E-4 0.0 0.0 16.63835481459493 0.0 34 6.216692129201513E-4 0.0 0.0 17.033736434012145 0.0 35 6.216692129201513E-4 0.0 0.0 17.456160664191387 0.0 36 6.216692129201513E-4 0.0 0.0 17.8515422836086 0.0 37 6.216692129201513E-4 0.0 0.0 18.238375951348168 0.0 38 6.216692129201513E-4 0.0 0.0 18.644636781991487 0.0 39 6.216692129201513E-4 0.0 0.0 19.06861518520303 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATGCG 20 7.030968E-4 45.000004 1 CGGTCTA 30 2.1640062E-6 45.000004 31 GATTCGT 20 7.030968E-4 45.000004 11 CGTTTAT 20 7.030968E-4 45.000004 39 GTTAGCG 25 3.888884E-5 45.0 1 GCGTAAG 50 2.1827873E-11 45.0 1 CGTTTTT 2800 0.0 41.785713 1 TCGGCGT 145 0.0 40.344826 4 GCTAGCG 45 1.925946E-8 40.0 1 TAGTGCG 40 3.4550612E-7 39.375004 1 CGTTTGG 40 3.4550612E-7 39.375004 2 AATGGGC 155 0.0 39.193546 4 CGACGGT 35 6.2440013E-6 38.57143 28 CACGACG 35 6.2440013E-6 38.57143 26 AAATGCG 35 6.2440013E-6 38.57143 1 ACGGTCT 35 6.2440013E-6 38.57143 30 CGTAAGG 100 0.0 38.25 2 ATGGGCG 155 0.0 37.741936 5 CGTTCAT 60 1.546141E-10 37.500004 17 TACGAAT 60 1.546141E-10 37.500004 12 >>END_MODULE