SRR3551525_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551525_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	223717
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1319	0.5895841621334096	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	897	0.4009529897146842	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	422	0.18863117241872543	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	366	0.16359954764278084	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	362	0.16181157444449906	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	343	0.1533187017526607	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	333	0.14884876875695632	No Hit
TCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	325	0.14527282236039282	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCC	250	0.11174832489260986	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	241	0.1077253851964759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAGTAG	20	7.0210965E-4	45.0	1
GAGTATC	25	3.880704E-5	45.0	27
TATGCGG	20	7.0210965E-4	45.0	2
GCGTTGA	20	7.0210965E-4	45.0	17
GAAAGGT	20	7.0210965E-4	45.0	9
GTCCCGA	20	7.0210965E-4	45.0	20
GCGTGAC	20	7.0210965E-4	45.0	35
AGGGCGT	20	7.0210965E-4	45.0	6
TGCGTAG	25	3.880704E-5	45.0	1
ACGGGTA	30	2.1576416E-6	44.999996	5
TAGATGG	60	3.6379788E-12	41.249996	2
ACATACG	55	6.002665E-11	40.909092	17
CGTTTTT	645	0.0	40.813953	1
GCGGGAT	105	0.0	40.714287	5
ATAGCGG	50	1.0732037E-9	40.5	2
TACGAAA	50	1.0732037E-9	40.5	20
CATACGA	50	1.0732037E-9	40.5	18
ATACGAA	50	1.0732037E-9	40.5	19
TGACCCA	45	1.9163053E-8	40.0	11
ATTAGTC	40	3.4416007E-7	39.375	31