SRR3551520_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551520_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351338
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3186	0.9068190745094468	No Hit
GCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	920	0.26185610437812024	TruSeq Adapter, Index 16 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGCT	688	0.19582282588276817	TruSeq Adapter, Index 13 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	498	0.14174384780467814	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCC	496	0.1411745954038561	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	441	0.12552015438125108	No Hit
TCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCGTCTTCTGC	356	0.10132692734631607	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	20	7.0265913E-4	45.000004	1
GCCTTAA	20	7.0265913E-4	45.000004	33
ACGTTAG	20	7.0265913E-4	45.000004	1
TAGCCCG	20	7.0265913E-4	45.000004	1
CTACGAA	20	7.0265913E-4	45.000004	11
TACGAAT	20	7.0265913E-4	45.000004	12
GCTACGA	20	7.0265913E-4	45.000004	10
CACCGGG	20	7.0265913E-4	45.000004	3
AAATCGC	25	3.885258E-5	45.0	24
TTAACGG	25	3.885258E-5	45.0	2
TTTGCGC	25	3.885258E-5	45.0	13
TATCGCG	25	3.885258E-5	45.0	1
AATCGCA	25	3.885258E-5	45.0	25
AGTACGG	60	3.6379788E-12	41.249996	2
CGTTTTT	1365	0.0	40.87912	1
CCCTCGT	80	0.0	39.375004	14
AGCGCTT	40	3.449095E-7	39.375004	37
AGGGATA	115	0.0	39.130436	6
ACGGGAT	75	0.0	39.0	5
GATAAGT	35	6.2359104E-6	38.571426	32