SRR3551516_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551516_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	740293
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9815	1.3258263957649201	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	1640	0.2215339061695842	TruSeq Adapter, Index 13 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	1077	0.14548293716136718	Illumina PCR Primer Index 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCC	884	0.11941217869141003	No Hit
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	789	0.10657942193158655	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACA	20	7.0316566E-4	45.000004	39
CGCATCG	40	6.8102963E-9	45.000004	21
ATTCGGA	20	7.0316566E-4	45.000004	17
ATATGCG	20	7.0316566E-4	45.000004	1
GCGTACG	20	7.0316566E-4	45.000004	1
CGTTTTT	4325	0.0	43.283234	1
ACAACGA	150	0.0	40.5	13
CGAATAT	100	0.0	40.5	14
GCGATAC	50	1.0804797E-9	40.5	9
TTAGGCG	40	3.455989E-7	39.375004	1
TCGATAG	40	3.455989E-7	39.375004	1
ACGGGCC	80	0.0	39.375004	5
CGACGTT	35	6.245278E-6	38.571426	27
CTAACGG	35	6.245278E-6	38.571426	2
CGGTCTA	35	6.245278E-6	38.571426	31
TCGACGT	35	6.245278E-6	38.571426	26
CTCGTAA	65	9.094947E-12	38.076927	33
CGAATAG	65	9.094947E-12	38.076927	26
CACAACG	160	0.0	37.968754	12
ACGGGAG	360	0.0	37.5	5