SRR3551515_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551515_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	631361
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4833	0.7654891575501179	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	3748	0.5936381879780348	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	3488	0.5524573104768904	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	3369	0.5336091396205974	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1980	0.31360822097025315	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	900	0.14254919135011507	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	847	0.1341546278594972	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	844	0.13367946388833013	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	843	0.1335210758979411	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC	798	0.12639361633043536	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	653	0.10342735772402793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAACG	20	7.030869E-4	45.0	17
TCCGATA	20	7.030869E-4	45.0	14
TAAGTCG	20	7.030869E-4	45.0	10
GTCCGTT	20	7.030869E-4	45.0	9
CGTAAGG	75	0.0	45.0	2
CGTTTAG	20	7.030869E-4	45.0	27
GGTTACG	20	7.030869E-4	45.0	1
CGTTTTT	2115	0.0	41.489365	1
CGGTCTA	40	3.4549157E-7	39.375	31
ATAGTAG	40	3.4549157E-7	39.375	1
CGAATAT	75	0.0	39.0	14
TACGGCT	435	0.0	38.793102	7
TACGCGG	70	0.0	38.57143	2
TTACGGG	105	0.0	38.57143	3
ATAACGC	35	6.2438157E-6	38.57143	11
ATAGTCG	35	6.2438157E-6	38.57143	1
TATTAGT	130	0.0	38.076927	30
CTACGAA	90	0.0	37.5	11
CTAACGG	60	1.546141E-10	37.499996	2
ACATGCG	30	1.1393393E-4	37.499996	1