SRR3551512_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551512_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591338
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5827	0.9853924489885649	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTC	5227	0.8839276352948736	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGC	4974	0.8411433055207005	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG	4879	0.8250780433525328	No Hit
GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	2014	0.340583557965157	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	1165	0.19701084658858387	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	1010	0.17079910305104695	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCT	997	0.1686006987543503	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTCCAT	917	0.1550720569285248	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	907	0.15338097670029663	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTCCATCGTA	844	0.14272717126245904	No Hit
CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC	826	0.1396832268516483	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTC	788	0.1332571219843812	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	747	0.1263236930486456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	25	3.8885006E-5	45.0	21
TAGCGAG	25	3.8885006E-5	45.0	1
TAACGCC	20	7.030506E-4	45.0	12
TCTAGCG	20	7.030506E-4	45.0	1
ATTCCGG	20	7.030506E-4	45.0	2
CGTAAGG	25	3.8885006E-5	45.0	2
TGTAGCG	35	1.210592E-7	45.0	1
GATTACG	20	7.030506E-4	45.0	1
ATCTCGG	30	2.163708E-6	44.999996	2
CGTTTTT	2810	0.0	42.51779	1
TACGGCT	630	0.0	42.5	7
GCTACGA	85	0.0	42.35294	10
CGTTAGG	70	0.0	41.785713	2
TTGAGCG	50	1.0804797E-9	40.5	1
GTATGCG	45	1.9255822E-8	40.000004	1
CGAATAT	90	0.0	40.000004	14
ACGGCTG	675	0.0	39.666668	8
CGATGAA	580	0.0	39.56897	19
TCACGAC	40	3.4544246E-7	39.375	25
TCGAATG	80	0.0	39.375	44