SRR3551509_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551509_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	647162
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7774	1.2012448196896603	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC	2511	0.38800176771812933	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG	2444	0.3776488730796926	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC	2315	0.3577156878803144	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	1590	0.24568809664349883	RNA PCR Primer, Index 35 (95% over 24bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1066	0.16471918932199356	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC	1053	0.16271041872050584	RNA PCR Primer, Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT	789	0.1219169234287551	TruSeq Adapter, Index 10 (95% over 24bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	788	0.12176240261325603	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCC	655	0.1012111341518816	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG	649	0.10028400925888727	TruSeq Adapter, Index 10 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	25	3.888909E-5	45.000004	1
CACAACG	50	2.1827873E-11	45.000004	12
GCGTAAG	40	6.8066583E-9	45.0	1
ATCGCAT	30	2.1640262E-6	44.999996	10
AATATAC	170	0.0	42.35294	16
CGAATAT	170	0.0	42.35294	14
CGTAAGG	85	0.0	42.35294	2
ACGGGTA	80	0.0	42.1875	5
CGTTTTT	3240	0.0	42.083332	1
TACGAAT	175	0.0	41.142857	12
ACTACGG	45	1.9261279E-8	40.0	2
CCAATCG	35	6.2440595E-6	38.571426	24
AATCGGT	35	6.2440595E-6	38.571426	26
TAGTAAG	35	6.2440595E-6	38.571426	1
GCTACGA	190	0.0	37.894737	10
AGCTACG	190	0.0	37.894737	9
GACCTAT	155	0.0	37.741936	33
ATACGAA	90	0.0	37.5	19
ATTAGCG	30	1.139371E-4	37.499996	1
CTAAGCG	30	1.139371E-4	37.499996	1