SRR3551507_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551507_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	573377
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCG	3320	0.5790256672311586	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC	3064	0.5343779049386355	RNA PCR Primer, Index 16 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGC	3026	0.5277505027233391	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	2818	0.49147419586066415	Illumina PCR Primer Index 7 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2433	0.4243281471004243	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	1840	0.3209057914775095	RNA PCR Primer, Index 16 (96% over 25bp)
CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT	1606	0.2800949462570002	RNA PCR Primer, Index 16 (96% over 26bp)
TCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	811	0.14144271570014144	Illumina PCR Primer Index 7 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCC	652	0.11371226958876968	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT	625	0.10900332590948014	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCCACCT	595	0.1037711662658251	No Hit
ACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC	583	0.10167830240836308	Illumina PCR Primer Index 7 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATGCG	45	3.8380676E-10	45.000004	1
GGTCATA	20	7.030325E-4	45.000004	28
CGTTACC	20	7.030325E-4	45.000004	39
AATTGCG	20	7.030325E-4	45.000004	1
TATACGG	20	7.030325E-4	45.000004	2
TGCGTAG	30	2.1635915E-6	45.000004	1
TACCGGT	30	2.1635915E-6	45.000004	40
TTAATCG	25	3.8883518E-5	45.0	20
ATCGTTG	25	3.8883518E-5	45.0	23
TATAGCG	25	3.8883518E-5	45.0	1
CGTCATA	25	3.8883518E-5	45.0	38
TGATTCG	50	1.0786607E-9	40.5	15
CGAATAT	50	1.0786607E-9	40.5	14
GTAAGCG	40	3.454188E-7	39.375004	1
CGTTTTT	1215	0.0	39.074074	1
GACACGA	35	6.2428135E-6	38.571426	25
CAACCGG	35	6.2428135E-6	38.571426	2
ACTTCGG	35	6.2428135E-6	38.571426	12
CGGTATT	35	6.2428135E-6	38.571426	43
AGCTACG	70	0.0	38.571426	9