SRR3551506_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551506_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	424107
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	10639	2.5085650555166503	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	10635	2.507621897304218	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	8822	2.080135437519305	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	3556	0.8384676508522614	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2857	0.6736507532297275	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGGGTGAT	2341	0.5519833438259685	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCT	2227	0.5251033347716496	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTA	1644	0.38763802530965064	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT	1579	0.3723117043576267	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1529	0.3605222267022237	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTC	1337	0.3152506325054762	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	1146	0.27021482786183676	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCGATCGAATGC	568	0.1339284661653781	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATG	527	0.12426109448794762	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTT	517	0.12190319895686702	No Hit
TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	513	0.12096004074443477	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCC	497	0.11718740789470582	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG	457	0.10775582577038341	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTCGGGTGA	431	0.10162529738957386	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAATCG	30	2.162251E-6	45.000004	20
ATAGCGG	35	1.2095006E-7	45.000004	2
AATGCGG	30	2.162251E-6	45.000004	2
CACTAGG	30	2.162251E-6	45.000004	2
CGAGACA	30	2.162251E-6	45.000004	22
ATAACGC	30	2.162251E-6	45.000004	11
CGCCGAT	75	0.0	45.000004	38
GTCGATA	20	7.028248E-4	45.0	19
ATTAGCG	20	7.028248E-4	45.0	1
TTTCGAG	25	3.886629E-5	45.0	1
TTTCGAC	20	7.028248E-4	45.0	24
CGCATCG	20	7.028248E-4	45.0	21
TCGATTA	20	7.028248E-4	45.0	41
TAACGCC	20	7.028248E-4	45.0	12
CTAACGG	25	3.886629E-5	45.0	2
GTCGTTT	25	3.886629E-5	45.0	9
CATACGG	20	7.028248E-4	45.0	2
CGTAAGC	20	7.028248E-4	45.0	43
CCGGTGT	20	7.028248E-4	45.0	33
TTGCCCG	20	7.028248E-4	45.0	24

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content