SRR3551504_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551504_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	450846
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	6829	1.5147079046947294	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	6600	1.4639145073927682	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	5692	1.2625153600120662	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2884	0.6396862786849611	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	2307	0.5117046619022904	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTGTGGT	1592	0.3531139236014071	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCT	1235	0.2739294570651619	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1036	0.22979021661498605	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTA	1026	0.22757216433105765	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT	933	0.20694427809052315	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	787	0.17456071474516796	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTC	777	0.17234266246123953	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	515	0.1142296926223145	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	515	0.1142296926223145	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTACG	30	2.1625547E-6	45.000004	1
GTCGAAT	140	0.0	45.0	43
CCGATCG	25	3.8870214E-5	45.0	40
ACGTTAG	25	3.8870214E-5	45.0	1
TTTCGAT	20	7.0287206E-4	45.0	43
TGGAACG	25	3.8870214E-5	45.0	1
TAAGTAG	25	3.8870214E-5	45.0	1
CTAAGCG	20	7.0287206E-4	45.0	1
GCGTTGC	20	7.0287206E-4	45.0	40
ACGGGTA	25	3.8870214E-5	45.0	5
GGTATGA	20	7.0287206E-4	45.0	8
TTAACGG	35	1.2097371E-7	45.0	2
CGGTCTA	20	7.0287206E-4	45.0	31
CGATCGA	25	3.8870214E-5	45.0	41
GTACGAG	20	7.0287206E-4	45.0	1
GCGAGTA	25	3.8870214E-5	45.0	27
CGTAAGG	65	0.0	44.999996	2
GGTCGAA	145	0.0	43.44828	42
CGGCGAT	95	0.0	42.63158	31
CGGTCGA	145	0.0	41.896553	41