##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551504_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 450846 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29090421119407 33.0 31.0 34.0 30.0 34.0 2 32.41907879852544 34.0 31.0 34.0 30.0 34.0 3 32.434536404892135 34.0 31.0 34.0 30.0 34.0 4 35.97404878827804 37.0 35.0 37.0 35.0 37.0 5 36.02382853568624 37.0 35.0 37.0 35.0 37.0 6 36.037425196186724 37.0 35.0 37.0 35.0 37.0 7 36.12446378586036 37.0 36.0 37.0 35.0 37.0 8 35.93383993647498 37.0 35.0 37.0 35.0 37.0 9 37.800938679726556 39.0 38.0 39.0 35.0 39.0 10 37.59659174086052 39.0 37.0 39.0 35.0 39.0 11 37.557829059146584 39.0 37.0 39.0 35.0 39.0 12 37.475980711817336 39.0 37.0 39.0 35.0 39.0 13 37.38404244464851 39.0 37.0 39.0 35.0 39.0 14 38.723448805135234 40.0 38.0 41.0 35.0 41.0 15 38.70094222861021 40.0 38.0 41.0 35.0 41.0 16 38.83483717278184 40.0 38.0 41.0 35.0 41.0 17 38.694980104071014 40.0 38.0 41.0 35.0 41.0 18 38.65589580477591 40.0 38.0 41.0 35.0 41.0 19 38.5660247623357 40.0 38.0 41.0 35.0 41.0 20 38.30966227935925 40.0 37.0 41.0 34.0 41.0 21 38.340544221308384 40.0 37.0 41.0 34.0 41.0 22 38.29970987876126 40.0 37.0 41.0 34.0 41.0 23 38.169179719904356 40.0 37.0 41.0 34.0 41.0 24 38.13354670996305 40.0 37.0 41.0 34.0 41.0 25 38.12535100677393 40.0 37.0 41.0 34.0 41.0 26 38.04015340049595 40.0 36.0 41.0 34.0 41.0 27 37.940254543680105 40.0 36.0 41.0 34.0 41.0 28 37.8652732862219 40.0 36.0 41.0 33.0 41.0 29 37.76566721230753 40.0 36.0 41.0 33.0 41.0 30 37.68201558847145 40.0 36.0 41.0 33.0 41.0 31 37.61257280756622 40.0 36.0 41.0 33.0 41.0 32 37.3467525496511 40.0 36.0 41.0 33.0 41.0 33 37.24112889989043 40.0 36.0 41.0 33.0 41.0 34 36.96221104323871 40.0 35.0 41.0 31.0 41.0 35 36.94128593799213 40.0 35.0 41.0 31.0 41.0 36 36.8182949388483 40.0 35.0 41.0 31.0 41.0 37 36.65341158621791 40.0 35.0 41.0 31.0 41.0 38 36.54882598492612 39.0 35.0 41.0 30.0 41.0 39 36.51327947902388 39.0 35.0 41.0 30.0 41.0 40 36.4582518199119 39.0 35.0 41.0 30.0 41.0 41 36.38548417863306 39.0 35.0 41.0 30.0 41.0 42 36.271443020454875 39.0 35.0 41.0 30.0 41.0 43 36.22416523602294 39.0 35.0 41.0 30.0 41.0 44 36.271465200977715 39.0 35.0 41.0 30.0 41.0 45 36.18253904881046 39.0 35.0 41.0 30.0 41.0 46 36.14924608402869 39.0 35.0 41.0 30.0 41.0 47 35.99866695057736 39.0 35.0 41.0 30.0 41.0 48 36.01850964630938 39.0 35.0 41.0 30.0 41.0 49 35.992234598953964 39.0 35.0 41.0 30.0 41.0 50 35.843243590937924 38.0 35.0 41.0 29.0 41.0 51 35.07683333111528 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 9.0 10 8.0 11 16.0 12 9.0 13 15.0 14 17.0 15 16.0 16 18.0 17 57.0 18 121.0 19 235.0 20 547.0 21 1256.0 22 1832.0 23 2580.0 24 3090.0 25 3851.0 26 4661.0 27 4935.0 28 4975.0 29 4945.0 30 5454.0 31 6891.0 32 8731.0 33 11947.0 34 22200.0 35 32349.0 36 30341.0 37 44152.0 38 82797.0 39 172534.0 40 250.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.226769229404276 17.181254796538063 20.661600635250174 14.930375338807487 2 31.020792022109546 30.07811980143996 22.326027069110076 16.57506110734042 3 29.17714696370823 29.629407824401238 25.666192003477907 15.527253208412628 4 27.024305416927284 21.99886435723063 32.934527532683 18.042302693159083 5 29.72012616281391 25.89287694689539 24.16656685431389 20.220430035976808 6 24.489071656397083 37.22335342888702 24.033483717278184 14.254091197437708 7 71.19326776770782 5.954361356205888 17.616436654644822 5.235934221441467 8 70.90225930805641 12.118550458471407 11.42075120994752 5.558439023524662 9 65.38130536813014 7.370587739494196 12.938786193068145 14.309320699307523 10 39.93270429370561 22.975029167387532 20.359280108950728 16.732986429956124 11 31.674452030183254 22.908265793641288 25.639575376070766 19.777706800104692 12 26.276821797243404 19.923432835158792 30.289056573641552 23.51068879395625 13 25.665526587792726 21.588746489932262 33.50390155396743 19.241825368307584 14 20.700860160675706 28.980405726123777 28.039507947281333 22.279226165919184 15 17.739094945946064 23.450801382290184 36.21547047106994 22.594633200693806 16 20.348633457987873 23.10034912142949 30.09830407722371 26.45271334335893 17 20.70662709661392 25.209938648673823 29.979194669576753 24.104239585135502 18 21.125838978276395 23.528211406999286 30.32964693043744 25.016302684286874 19 22.538294672682024 24.671839164592786 27.825244096653844 24.96462206607134 20 26.346468638958758 23.56614010105446 30.391308783930654 19.696082476056127 21 23.306627983834836 28.55631412943666 27.25675729628299 20.88030059044552 22 21.760645541936714 22.966600568708607 30.012243648607285 25.260510240747397 23 23.920806661254616 26.535003083092672 27.707465520377244 21.83672473527546 24 23.087262612954312 24.738380733110642 27.581036540193328 24.593320113741722 25 21.325907294286743 30.201887118883164 26.059230868190024 22.41297471864007 26 20.538942343948932 25.921933431814853 29.09463541874609 24.44448880549012 27 25.304205870740788 25.34058192819721 26.537221135376605 22.8179910656854 28 19.86310181303594 26.950887886329255 30.804088313969736 22.38192198666507 29 22.844829498320934 25.55883827293577 28.940258979784673 22.656073248958624 30 23.853599677051587 27.034952067890146 28.211185194057393 20.900263061000874 31 23.386921476513045 24.291886808355848 27.13986594091996 25.18132577421115 32 26.55474374841964 26.743943608238734 26.954658575211937 19.746654068129693 33 26.968854109829078 24.26016866069567 24.9783739902317 23.792603239243558 34 23.12363867041074 25.47455228614649 28.462934128283273 22.9388749151595 35 27.716559534741354 23.359195822963937 25.975166686629137 22.94907795566557 36 25.127870714168477 27.952116687294552 26.83510555710819 20.08490704142878 37 24.231112175776207 24.520346193600474 30.4704932504669 20.778048380156417 38 24.494616787106906 24.08072823092586 27.380081003269407 24.044573978697827 39 24.433842154527266 24.411883436916376 29.633400318512308 21.52087409004405 40 26.4970743890375 22.618588165360233 29.184022925788405 21.70031451981386 41 23.160014727867164 24.79205759838171 28.260204149532214 23.78772352421891 42 24.906952706689204 24.340018542917093 28.90499194847021 21.848036801923495 43 26.168359040559302 24.077179347271574 26.53367225172232 23.220789360446805 44 24.064092838796398 23.276462472773407 29.474144164526244 23.185300523903948 45 22.945307266782894 22.630343842465052 28.084312603416688 26.340036287335366 46 25.98403889576485 25.759793809859687 26.767454962448372 21.488712331927086 47 22.32114735408543 24.87856163745492 32.14290467254894 20.65738633591071 48 23.679482572763206 23.867795211668728 28.576498405220406 23.876223810347657 49 23.110108551478774 22.41319652386846 31.92021222324253 22.55648270141024 50 23.667061479973206 22.570456430798988 29.292929292929294 24.46955279629851 51 22.160560368729012 22.56779476805827 27.78931164965421 27.48233321355851 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 189.0 1 616.5 2 1044.0 3 2953.0 4 4862.0 5 3295.0 6 1728.0 7 1638.0 8 1548.0 9 1558.5 10 1569.0 11 1526.0 12 1483.0 13 1451.5 14 1420.0 15 1365.5 16 1311.0 17 1297.5 18 1284.0 19 1335.0 20 1386.0 21 1448.5 22 1511.0 23 1598.5 24 1686.0 25 2157.5 26 3066.5 27 3504.0 28 3966.5 29 4429.0 30 5574.0 31 6719.0 32 7010.5 33 7302.0 34 8195.0 35 9088.0 36 10084.0 37 11080.0 38 12185.5 39 13291.0 40 14903.0 41 16515.0 42 18478.5 43 20442.0 44 22893.5 45 25345.0 46 40409.5 47 55474.0 48 48198.5 49 40923.0 50 40120.5 51 39318.0 52 34185.5 53 29053.0 54 26947.0 55 24841.0 56 23377.0 57 21913.0 58 20967.0 59 20021.0 60 19336.5 61 18652.0 62 17473.5 63 16295.0 64 14835.0 65 13375.0 66 11229.5 67 9084.0 68 7562.0 69 6040.0 70 5571.0 71 5102.0 72 4447.5 73 3793.0 74 3078.0 75 1925.0 76 1487.0 77 1205.5 78 924.0 79 661.5 80 399.0 81 335.0 82 271.0 83 178.5 84 86.0 85 62.5 86 39.0 87 30.0 88 21.0 89 13.5 90 6.0 91 3.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 450846.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.312051098959756 #Duplication Level Percentage of deduplicated Percentage of total 1 72.44443596085195 23.40828316602366 2 8.249658501435395 5.3312677409469655 3 3.28623855520678 3.185553243576395 4 1.9644976664853815 2.539077959330514 5 1.5776970840789863 2.5489314399720007 6 1.3118495753994595 2.5433130308673597 7 1.118481134157441 2.5298293692082385 8 1.032439800831365 2.6688198080850327 9 0.967874436608672 2.8146607427768666 >10 7.930358907283916 41.31885825437406 >50 0.07236200978914721 1.603535796386329 >100 0.034458099899593905 2.2199206157721587 >500 0.0034458099899593907 0.7854007434876522 >1k 0.004134971987951269 2.2446383596131367 >5k 0.0020674859939756344 4.257909729579642 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG 6829 1.5147079046947294 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC 6600 1.4639145073927682 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC 5692 1.2625153600120662 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2884 0.6396862786849611 No Hit GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 2307 0.5117046619022904 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTGTGGT 1592 0.3531139236014071 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCT 1235 0.2739294570651619 No Hit CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC 1036 0.22979021661498605 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTA 1026 0.22757216433105765 No Hit GAACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT 933 0.20694427809052315 No Hit CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT 787 0.17456071474516796 Illumina Single End Adapter 2 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTC 777 0.17234266246123953 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC 515 0.1142296926223145 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 515 0.1142296926223145 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.4361045678568734E-4 0.0 0.0 0.17810959839945348 0.0 2 4.4361045678568734E-4 0.0 0.0 1.0804132675015417 0.0 3 4.4361045678568734E-4 0.0 0.0 1.3882789245108085 0.0 4 4.4361045678568734E-4 0.0 0.0 1.9179498099129193 0.0 5 4.4361045678568734E-4 0.0 0.0 4.100735062526894 0.0 6 4.4361045678568734E-4 0.0 0.0 4.851323955408277 0.0 7 4.4361045678568734E-4 0.0 0.0 5.704386863807153 0.0 8 4.4361045678568734E-4 0.0 0.0 6.68143889487763 0.0 9 4.4361045678568734E-4 0.0 0.0 7.053849873349215 0.0 10 4.4361045678568734E-4 0.0 0.0 9.312936124530328 0.0 11 4.4361045678568734E-4 0.0 0.0 10.325476992143658 0.0 12 4.4361045678568734E-4 0.0 0.0 12.602085856367806 0.0 13 4.4361045678568734E-4 0.0 0.0 13.008211229555103 0.0 14 4.4361045678568734E-4 0.0 0.0 13.1974110893742 0.0 15 4.4361045678568734E-4 0.0 0.0 13.682499123869349 0.0 16 4.4361045678568734E-4 0.0 0.0 14.253425781752528 0.0 17 4.4361045678568734E-4 0.0 0.0 14.870931537598205 0.0 18 4.4361045678568734E-4 0.0 0.0 15.544110405770486 0.0 19 6.65415685178531E-4 0.0 0.0 16.298691792762938 0.0 20 6.65415685178531E-4 0.0 0.0 16.75760681030773 0.0 21 6.65415685178531E-4 0.0 0.0 17.203213514148956 0.0 22 6.65415685178531E-4 0.0 0.0 17.711812902853747 0.0 23 6.65415685178531E-4 0.0 0.0 18.192464832781038 0.0 24 6.65415685178531E-4 0.0 0.0 18.589052581147442 0.0 25 6.65415685178531E-4 0.0 0.0 18.938617621094565 0.0 26 6.65415685178531E-4 0.0 0.0 19.282637530331865 0.0 27 6.65415685178531E-4 0.0 0.0 19.710056205444875 0.0 28 6.65415685178531E-4 0.0 0.0 20.04742195783039 0.0 29 6.65415685178531E-4 0.0 0.0 20.38035160564805 0.0 30 6.65415685178531E-4 0.0 0.0 20.804443202335165 0.0 31 6.65415685178531E-4 0.0 0.0 21.14402700700461 0.0 32 6.65415685178531E-4 0.0 0.0 21.497362735834407 0.0 33 6.65415685178531E-4 0.0 0.0 21.816762264720104 0.0 34 6.65415685178531E-4 0.0 0.0 22.13483096223544 0.0 35 6.65415685178531E-4 0.0 0.0 22.505023888423096 0.0 36 6.65415685178531E-4 0.0 0.0 22.843498666950577 0.0 37 6.65415685178531E-4 0.0 0.0 23.18463510821877 0.0 38 6.65415685178531E-4 0.0 0.0 23.50669629984518 0.0 39 6.65415685178531E-4 0.0 0.0 23.83896053197766 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGTACG 30 2.1625547E-6 45.000004 1 GTCGAAT 140 0.0 45.0 43 CCGATCG 25 3.8870214E-5 45.0 40 ACGTTAG 25 3.8870214E-5 45.0 1 TTTCGAT 20 7.0287206E-4 45.0 43 TGGAACG 25 3.8870214E-5 45.0 1 TAAGTAG 25 3.8870214E-5 45.0 1 CTAAGCG 20 7.0287206E-4 45.0 1 GCGTTGC 20 7.0287206E-4 45.0 40 ACGGGTA 25 3.8870214E-5 45.0 5 GGTATGA 20 7.0287206E-4 45.0 8 TTAACGG 35 1.2097371E-7 45.0 2 CGGTCTA 20 7.0287206E-4 45.0 31 CGATCGA 25 3.8870214E-5 45.0 41 GTACGAG 20 7.0287206E-4 45.0 1 GCGAGTA 25 3.8870214E-5 45.0 27 CGTAAGG 65 0.0 44.999996 2 GGTCGAA 145 0.0 43.44828 42 CGGCGAT 95 0.0 42.63158 31 CGGTCGA 145 0.0 41.896553 41 >>END_MODULE