##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551499_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 464449 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25918238601009 33.0 31.0 34.0 30.0 34.0 2 32.377044627074234 34.0 31.0 34.0 30.0 34.0 3 32.40937971661044 34.0 31.0 34.0 30.0 34.0 4 35.944028300200884 37.0 35.0 37.0 35.0 37.0 5 36.007621934808775 37.0 35.0 37.0 35.0 37.0 6 36.01284963472846 37.0 35.0 37.0 35.0 37.0 7 36.1234215166789 37.0 36.0 37.0 35.0 37.0 8 35.957556157941994 37.0 35.0 37.0 35.0 37.0 9 37.83201169557906 39.0 38.0 39.0 35.0 39.0 10 37.58189596704913 39.0 37.0 39.0 35.0 39.0 11 37.54481116333548 39.0 37.0 39.0 35.0 39.0 12 37.452217573942455 39.0 37.0 39.0 35.0 39.0 13 37.38318523669983 39.0 37.0 39.0 35.0 39.0 14 38.657878475354664 40.0 38.0 41.0 35.0 41.0 15 38.664342048319625 40.0 38.0 41.0 35.0 41.0 16 38.76976804772968 40.0 38.0 41.0 35.0 41.0 17 38.66510208871157 40.0 38.0 41.0 35.0 41.0 18 38.62256351074068 40.0 38.0 41.0 35.0 41.0 19 38.57867279292237 40.0 38.0 41.0 35.0 41.0 20 38.41850235440275 40.0 37.0 41.0 34.0 41.0 21 38.39197199261921 40.0 37.0 41.0 34.0 41.0 22 38.35846131652776 40.0 37.0 41.0 34.0 41.0 23 38.29482677323021 40.0 37.0 41.0 34.0 41.0 24 38.20741136271151 40.0 37.0 41.0 34.0 41.0 25 38.16808519342274 40.0 37.0 41.0 34.0 41.0 26 38.15607311028767 40.0 37.0 41.0 34.0 41.0 27 38.10405663485119 40.0 37.0 41.0 34.0 41.0 28 38.028334650306064 40.0 37.0 41.0 34.0 41.0 29 38.01441277729094 40.0 37.0 41.0 34.0 41.0 30 37.88799200773389 40.0 36.0 41.0 33.0 41.0 31 37.900800733772705 40.0 36.0 41.0 34.0 41.0 32 37.73078421958062 40.0 36.0 41.0 33.0 41.0 33 37.630807688249945 40.0 36.0 41.0 33.0 41.0 34 37.54610947595969 40.0 36.0 41.0 33.0 41.0 35 37.4328053241583 40.0 36.0 41.0 33.0 41.0 36 37.36516388236383 40.0 36.0 41.0 33.0 41.0 37 37.29015457025422 40.0 36.0 41.0 33.0 41.0 38 37.11704406727111 40.0 35.0 41.0 32.0 41.0 39 37.11596752280659 40.0 35.0 41.0 32.0 41.0 40 37.015239563439685 40.0 35.0 41.0 32.0 41.0 41 36.978910493940134 39.0 35.0 41.0 32.0 41.0 42 36.90813846084285 39.0 35.0 41.0 32.0 41.0 43 36.876567717876455 39.0 35.0 41.0 32.0 41.0 44 36.90719756098086 39.0 35.0 41.0 32.0 41.0 45 36.79436278256601 39.0 35.0 41.0 32.0 41.0 46 36.71784200202821 39.0 35.0 41.0 32.0 41.0 47 36.62123936104933 39.0 35.0 41.0 31.0 41.0 48 36.57571875491173 39.0 35.0 41.0 31.0 41.0 49 36.57912709468639 39.0 35.0 41.0 32.0 41.0 50 36.47927113633575 39.0 35.0 41.0 31.0 41.0 51 35.72629287607466 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 11.0 10 10.0 11 19.0 12 14.0 13 10.0 14 16.0 15 21.0 16 32.0 17 45.0 18 108.0 19 209.0 20 453.0 21 791.0 22 1269.0 23 1738.0 24 2231.0 25 2805.0 26 3432.0 27 3947.0 28 4153.0 29 4530.0 30 5312.0 31 6590.0 32 8907.0 33 12089.0 34 23642.0 35 34289.0 36 30337.0 37 46562.0 38 86239.0 39 184368.0 40 264.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.241890928821036 18.867087667321925 22.02566912621192 12.865352277645123 2 30.241641170505268 29.13280037205377 22.83910612360022 17.786452333840742 3 30.4117351958988 28.04290675617775 25.585801670366394 15.959556377557064 4 28.048935405179037 23.437449536978225 29.96884480319691 18.54477025464583 5 28.775387609834446 26.657609339238537 23.531324214284023 21.03567883664299 6 24.677844068993583 36.33832778195238 23.756106698474966 15.227721450579073 7 73.67332042915369 6.363669638647085 14.625502477128812 5.3375074550704165 8 72.6527562767925 10.338271801640223 10.694392710502122 6.314579211065155 9 66.58922723485247 7.942960368092083 12.710975801433527 12.756836595621909 10 39.49970825645012 23.638548042949818 20.40525439822241 16.456489302377655 11 30.58290576575684 22.406981175543493 25.388794033359957 21.6213190253397 12 25.77591942279992 20.07475524761599 30.627690015480706 23.521635314103378 13 24.586983716188428 22.49009040820413 32.774104368832745 20.148821506774695 14 19.994014412777293 28.034725018247432 28.863233638138958 23.108026930836324 15 19.05634418418384 23.425176930082745 35.165755551201535 22.352723334531884 16 20.69613671253464 23.470607106485318 30.080805427506576 25.75245075347347 17 20.352934337246932 25.125686566232247 29.331745789096324 25.189633307424497 18 21.264767498692 24.09026610026074 29.610786114298882 25.03418028674838 19 22.690973605282817 25.5726678278993 27.09920787858301 24.637150688234875 20 24.771503437406476 24.77580961526454 29.582795958221464 20.869890989107525 21 23.358215864389848 27.69604412971069 27.97680692605647 20.968933079842998 22 21.257016378547483 23.531324214284023 27.970347659269372 27.241311747899122 23 22.646835282237664 26.609810765014025 27.607552174727473 23.135801778020838 24 22.94654526115892 24.434545020012962 28.047212934035816 24.5716967847923 25 21.50935840103004 28.797133808017673 25.449941758944473 24.24356603200782 26 20.79840843666366 24.45930554269683 28.567183910397056 26.17510211024246 27 24.13246664326977 24.462965793876183 27.463295216482326 23.941272346371722 28 19.867197474857303 25.186618982923854 30.454151047800725 24.49203249441812 29 22.18973450260416 22.521740815460902 28.52067718952996 26.76784749240498 30 21.195868652962975 26.539189448141776 29.51669612810018 22.748245770795073 31 22.357890747961562 24.366076792069745 26.57600726882822 26.70002519114047 32 22.739848723971846 25.698408221354768 27.539729873462964 24.022013181210426 33 21.244097844973293 25.243891148436106 27.17392006442042 26.338090942170183 34 19.834255214243115 23.33022570831243 28.12149450208742 28.714024575357033 35 20.833719095099784 22.67956223395895 28.633068431625432 27.853650239315837 36 20.268102633443068 26.053883203537954 28.661704514381558 25.01630964863742 37 20.106405654872763 24.188662264317504 31.97982986291283 23.725102217896907 38 19.597846049835397 26.891650105824322 28.292665071945468 25.217838772394817 39 21.578257246759065 23.596132191047886 29.508299081276956 25.317311480916093 40 20.78699706533979 23.901440201184627 28.803377765911865 26.508184967563714 41 18.771705827765807 24.00500377867107 27.84697566363584 29.376314729927287 42 19.57394676272314 23.317737792524046 30.43821818972589 26.670097255026924 43 22.013827137102243 22.83286216570603 29.778727050763376 25.37458364642835 44 22.023946655068695 22.628964644126697 29.539303561855014 25.807785138949598 45 21.300724083806834 22.06205632911256 28.275225051620307 28.3619945354603 46 23.301374316663402 24.39815781711232 27.41528133336491 24.885186532859365 47 19.159477143884473 23.722949128967873 32.83568271220306 24.28189101494459 48 20.395780806934667 23.391588742789843 29.114068498371186 27.098561951904298 49 20.34496790820951 22.09973538537062 32.49226502802245 25.06303167839741 50 20.64381665155916 22.11114675669449 30.9764904219839 26.268546169762452 51 20.69075399021206 21.552850797396488 27.834918365633254 29.9214768467582 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 128.0 1 458.5 2 789.0 3 2104.0 4 3419.0 5 2348.5 6 1278.0 7 1243.5 8 1209.0 9 1133.5 10 1058.0 11 1070.0 12 1082.0 13 1055.5 14 1029.0 15 1008.5 16 988.0 17 988.5 18 989.0 19 1022.0 20 1055.0 21 1129.0 22 1203.0 23 1282.5 24 1362.0 25 1858.0 26 2938.5 27 3523.0 28 4208.5 29 4894.0 30 5590.0 31 6286.0 32 6998.5 33 7711.0 34 8918.0 35 10125.0 36 10524.5 37 10924.0 38 12094.5 39 13265.0 40 15410.0 41 17555.0 42 20645.5 43 23736.0 44 38531.5 45 53327.0 46 48230.5 47 43134.0 48 43487.0 49 43840.0 50 38491.0 51 33142.0 52 30397.0 53 27652.0 54 26214.5 55 24777.0 56 23667.5 57 22558.0 58 21191.0 59 19824.0 60 19514.5 61 19205.0 62 17723.5 63 16242.0 64 15149.5 65 14057.0 66 12126.0 67 10195.0 68 8701.0 69 7207.0 70 5891.0 71 4575.0 72 4064.0 73 3553.0 74 2985.5 75 1961.0 76 1504.0 77 1110.5 78 717.0 79 520.5 80 324.0 81 260.0 82 196.0 83 108.5 84 21.0 85 16.5 86 12.0 87 7.0 88 2.0 89 3.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 464449.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.3066911184621 #Duplication Level Percentage of deduplicated Percentage of total 1 71.83189878962766 23.206509666491318 2 9.115748432269072 5.889993378298439 3 3.378929909478147 3.274861346893307 4 2.0412704390678815 2.6378677425685417 5 1.478857871982782 2.3888502239126947 6 1.2359608895055265 2.3957884015052824 7 1.0503699504949346 2.375378428552792 8 0.9516406924904625 2.4595489526438996 9 0.886108461625763 2.576450913047923 >10 7.89018602757789 41.981339589569345 >50 0.08421920923493195 1.840888485787659 >100 0.044114823884964356 2.5264979804945 >500 0.0060156578024951396 1.4986235884300707 >1k 0.0026736256899978395 1.5191378882716928 >5k 0.0020052192674983797 3.428263413532537 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG 5397 1.1620220949985898 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC 5335 1.1486729436385912 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC 5144 1.1075489450940792 No Hit GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 2671 0.5750900529444568 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2046 0.4405219948799545 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT 1246 0.2682748805573917 No Hit CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1072 0.23081113319223423 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTACCTT 944 0.2032515949006242 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 926 0.19937603482836652 No Hit GAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT 870 0.18731873682578712 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 833 0.17935230778836858 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTA 799 0.17203180542965968 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC 762 0.16406537639224114 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 671 0.1444722671380496 No Hit TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 612 0.1317690424567606 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC 523 0.11260655098837546 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2045434482580434 0.0 2 0.0 0.0 0.0 1.2526671389108384 0.0 3 0.0 0.0 0.0 1.645821177352088 0.0 4 0.0 0.0 0.0 2.3029439184926654 0.0 5 0.0 0.0 0.0 4.675863227178872 0.0 6 0.0 0.0 0.0 5.604921100056195 0.0 7 0.0 0.0 0.0 6.681465564572213 0.0 8 0.0 0.0 0.0 8.098413388768197 0.0 9 0.0 0.0 0.0 8.619676218486852 0.0 10 0.0 0.0 0.0 10.789128623379531 0.0 11 0.0 0.0 0.0 12.085072849763915 0.0 12 0.0 0.0 0.0 14.25021907679853 0.0 13 0.0 0.0 0.0 14.758778681835896 0.0 14 0.0 0.0 0.0 14.97279572138168 0.0 15 0.0 0.0 0.0 15.483723724240983 0.0 16 0.0 0.0 0.0 16.161946736886073 0.0 17 0.0 0.0 0.0 16.928446395621478 0.0 18 0.0 0.0 0.0 17.754801926583973 0.0 19 0.0 0.0 0.0 18.449173106196806 0.0 20 0.0 0.0 0.0 18.96031641794901 0.0 21 0.0 0.0 0.0 19.506985697030245 0.0 22 0.0 0.0 0.0 20.130089633092116 0.0 23 0.0 0.0 0.0 20.72584933975528 0.0 24 0.0 0.0 0.0 21.194792108498458 0.0 25 0.0 0.0 0.0 21.631223234413252 0.0 26 0.0 0.0 0.0 22.02566912621192 0.0 27 0.0 0.0 0.0 22.465545194413163 0.0 28 0.0 0.0 0.0 22.88195259328796 0.0 29 0.0 0.0 0.0 23.27919750069437 0.0 30 0.0 0.0 0.0 23.74297285600787 0.0 31 0.0 0.0 0.0 24.130959481019445 0.0 32 0.0 0.0 0.0 24.5447831731794 0.0 33 0.0 0.0 0.0 24.96872638330581 0.0 34 0.0 0.0 0.0 25.374153028642542 0.0 35 0.0 0.0 0.0 25.78410116073024 0.0 36 0.0 0.0 0.0 26.167996916776655 0.0 37 0.0 0.0 0.0 26.554261070645 0.0 38 2.1530889290320357E-4 0.0 0.0 26.944185475692702 0.0 39 2.1530889290320357E-4 0.0 0.0 27.326789378381694 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACACGT 20 7.028939E-4 45.000004 10 TAGCCGT 20 7.028939E-4 45.000004 44 GTATGCG 40 6.7993824E-9 45.000004 1 TAGTACG 20 7.028939E-4 45.000004 1 TATCCTC 20 7.028939E-4 45.000004 42 CCATTCG 20 7.028939E-4 45.000004 35 TCGATTA 25 3.8872036E-5 45.0 41 ATCGCAT 25 3.8872036E-5 45.0 10 TACGGCT 725 0.0 41.89655 7 CGTTTTT 1055 0.0 41.587677 1 ACGGCTG 750 0.0 40.499996 8 CATCGAA 45 1.924127E-8 40.000004 42 TGAATGA 495 0.0 40.0 22 GTTACCG 40 3.4522964E-7 39.375004 38 ATGAATG 510 0.0 39.264706 21 GAATGAC 155 0.0 39.193546 1 CGAATAT 115 0.0 39.130436 14 CGTATGG 70 0.0 38.57143 2 GGATCGA 35 6.2402487E-6 38.57143 8 GATGAAT 520 0.0 38.509613 20 >>END_MODULE