SRR3551498_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551498_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	648708
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6706	1.0337470788089558	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCG	4794	0.7390073808246546	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGC	4209	0.6488281322259013	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTC	4191	0.6460533861151705	No Hit
GCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	1932	0.2978227492184465	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTCACCCGT	1057	0.16293925772458487	No Hit
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	967	0.14906552717093052	No Hit
GAACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCT	901	0.13889145809825065	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCT	856	0.13195459282142352	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	747	0.11515196359533103	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTCACCCGTCGTA	649	0.10004501254801852	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCG	20	7.031012E-4	45.0	1
TTACGAG	20	7.031012E-4	45.0	1
TGCGTTG	25	3.88892E-5	45.0	1
TGCGTCG	20	7.031012E-4	45.0	1
CGATCAC	75	0.0	42.0	34
CGATGAA	620	0.0	41.37097	19
CGTTTTT	2850	0.0	40.657894	1
CAAACGA	50	1.0804797E-9	40.5	15
CGTCGAA	95	0.0	40.263157	42
ATTAGCG	40	3.4551158E-7	39.375	1
TCGATTT	40	3.4551158E-7	39.375	14
TACGAAA	80	0.0	39.375	20
ATACGAA	80	0.0	39.375	19
ACATACG	80	0.0	39.375	17
GATGAAT	710	0.0	38.661972	20
ATGAATG	715	0.0	38.39161	21
CCGTCGA	100	0.0	38.25	41
CCGATGA	645	0.0	37.67442	18
CTAGACG	30	1.1393739E-4	37.499996	17
CTCACGA	60	1.546141E-10	37.499996	24