SRR3551497_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551497_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401549
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2580	0.6425118727726877	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1086	0.2704526720275732	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	930	0.23160311692968977	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	893	0.22238879937442252	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	864	0.21516676669596987	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	858	0.21367255303835894	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	627	0.15614532722033925	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	513	0.12775526772573212	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	507	0.1262610540681212	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	456	0.11356023797842853	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	408	0.10160652871754132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	20	7.0277974E-4	45.0	1
TCGATGG	25	3.886257E-5	45.0	2
TAGTAAG	20	7.0277974E-4	45.0	1
CCATTAC	75	0.0	45.0	6
CGAATAT	180	0.0	43.75	14
GCTACGA	180	0.0	43.75	10
CTACGAA	185	0.0	42.567566	11
AGCTACG	185	0.0	42.567566	9
ACGGGTA	65	0.0	41.53846	5
TACGAAT	190	0.0	41.447372	12
AAGCTAC	185	0.0	41.351353	8
ATAGGGT	60	3.6379788E-12	41.249996	4
ATCGGGA	55	6.002665E-11	40.909092	4
CGTTTTT	1050	0.0	40.714283	1
TAAGTAG	45	1.9228537E-8	40.0	1
TAGCGAG	40	3.450732E-7	39.375	1
GTTCACG	40	3.450732E-7	39.375	1
AATACGG	40	3.450732E-7	39.375	2
GACCTAT	185	0.0	38.91892	33
GTGTTAG	35	6.2381387E-6	38.571426	1