SRR3551495_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551495_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494373
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	3465	0.7008877912021895	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	3392	0.6861216126285213	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	3367	0.6810647021580871	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2848	0.5760832407918718	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2194	0.44379446288531127	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT	1011	0.2045014594243618	TruSeq Adapter, Index 16 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	975	0.1972195083469364	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC	749	0.15150503769421064	No Hit
TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	747	0.1511004848565759	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	674	0.13633430628290785	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATGCACT	617	0.12480455041031771	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	599	0.12116357487160505	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTA	532	0.10761105481084121	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	506	0.10235186792158957	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	25	3.887568E-5	45.000004	36
CGACGGT	30	2.1629821E-6	45.000004	28
CGAATAT	50	2.1827873E-11	45.000004	14
GTTACAC	20	7.0293824E-4	45.0	33
TCGTCGG	40	6.8012014E-9	45.0	2
TTACGCG	20	7.0293824E-4	45.0	1
GCATATT	65	0.0	41.538464	27
CGTATGG	55	6.002665E-11	40.909092	2
CTACGAA	55	6.002665E-11	40.909092	11
GCGTAAG	45	1.9244908E-8	40.0	1
CGTAAGG	85	0.0	39.705883	2
ATATTAG	70	0.0	38.57143	29
TACGGCT	380	0.0	38.486843	7
CGTTTTT	1330	0.0	38.402256	1
TATGGGC	125	0.0	37.800003	4
CTGAACG	30	1.1389809E-4	37.500004	12
ACGATTG	30	1.1389809E-4	37.500004	1
CCACTAA	30	1.1389809E-4	37.500004	21
CGCAGTA	30	1.1389809E-4	37.500004	37
CGATGAA	330	0.0	37.500004	19