##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551495_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 494373 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33126000004046 33.0 31.0 34.0 30.0 34.0 2 32.45683522360647 34.0 31.0 34.0 31.0 34.0 3 32.46445699906751 34.0 31.0 34.0 31.0 34.0 4 35.98668818887763 37.0 35.0 37.0 35.0 37.0 5 36.06348040851746 37.0 35.0 37.0 35.0 37.0 6 36.0718546522565 37.0 35.0 37.0 35.0 37.0 7 36.19636185633115 37.0 37.0 37.0 35.0 37.0 8 36.08655610237614 37.0 37.0 37.0 35.0 37.0 9 37.940292046693486 39.0 38.0 39.0 35.0 39.0 10 37.66413821143145 39.0 37.0 39.0 35.0 39.0 11 37.59721101273735 39.0 37.0 39.0 35.0 39.0 12 37.531022122971926 39.0 37.0 39.0 35.0 39.0 13 37.49095116440421 39.0 37.0 39.0 35.0 39.0 14 38.77155305811604 40.0 38.0 41.0 35.0 41.0 15 38.80052713234744 40.0 38.0 41.0 35.0 41.0 16 38.867717290386004 40.0 38.0 41.0 35.0 41.0 17 38.79401989995408 40.0 38.0 41.0 35.0 41.0 18 38.74048340018569 40.0 38.0 41.0 35.0 41.0 19 38.69044425969865 40.0 38.0 41.0 35.0 41.0 20 38.56169531912139 40.0 38.0 41.0 35.0 41.0 21 38.500041466665856 40.0 38.0 41.0 35.0 41.0 22 38.4962710342191 40.0 38.0 41.0 35.0 41.0 23 38.43944956540911 40.0 37.0 41.0 35.0 41.0 24 38.37119543340757 40.0 37.0 41.0 34.0 41.0 25 38.294399168239366 40.0 37.0 41.0 34.0 41.0 26 38.290640872377736 40.0 37.0 41.0 34.0 41.0 27 38.27653411492942 40.0 37.0 41.0 34.0 41.0 28 38.19568827585649 40.0 37.0 41.0 34.0 41.0 29 38.168919014590195 40.0 37.0 41.0 34.0 41.0 30 38.0417336707304 40.0 37.0 41.0 34.0 41.0 31 38.010283733132674 40.0 37.0 41.0 34.0 41.0 32 37.86711652942212 40.0 37.0 41.0 34.0 41.0 33 37.79078752278138 40.0 36.0 41.0 34.0 41.0 34 37.6524992262927 40.0 36.0 41.0 33.0 41.0 35 37.574260730258324 40.0 36.0 41.0 33.0 41.0 36 37.50591355110413 40.0 36.0 41.0 33.0 41.0 37 37.42864395911589 40.0 36.0 41.0 33.0 41.0 38 37.26176995911994 40.0 35.0 41.0 33.0 41.0 39 37.24987003740091 40.0 35.0 41.0 33.0 41.0 40 37.16214882285238 40.0 35.0 41.0 32.0 41.0 41 37.10425528902266 40.0 35.0 41.0 32.0 41.0 42 37.019400331328775 40.0 35.0 41.0 32.0 41.0 43 37.025126776745495 40.0 35.0 41.0 32.0 41.0 44 37.011248591650435 40.0 35.0 41.0 32.0 41.0 45 36.91272177080868 39.0 35.0 41.0 32.0 41.0 46 36.856444425565314 39.0 35.0 41.0 32.0 41.0 47 36.78910660574101 39.0 35.0 41.0 32.0 41.0 48 36.7508298390082 39.0 35.0 41.0 32.0 41.0 49 36.73097034020871 39.0 35.0 41.0 32.0 41.0 50 36.6359246965348 39.0 35.0 41.0 32.0 41.0 51 35.84193109251517 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 10.0 10 8.0 11 9.0 12 12.0 13 10.0 14 15.0 15 18.0 16 34.0 17 41.0 18 97.0 19 164.0 20 353.0 21 622.0 22 1005.0 23 1523.0 24 2019.0 25 2585.0 26 3541.0 27 4226.0 28 4516.0 29 4838.0 30 5465.0 31 6793.0 32 8668.0 33 12288.0 34 24442.0 35 35431.0 36 31056.0 37 47581.0 38 91529.0 39 205216.0 40 254.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.44088370521853 19.44139344179395 23.60403986463662 13.5136829883509 2 31.46490605271728 26.40334322465021 24.59964439805572 17.532106324576787 3 30.55466216803911 26.131685994178483 27.20820109512453 16.105450742657872 4 27.66979588286577 24.471603424944323 29.32805796433058 18.530542727859327 5 27.15014776292395 28.018520428906918 24.373701638236717 20.45763016993242 6 25.227914954902474 34.728636070335554 24.628772202365422 15.414676772396552 7 76.37451883496874 5.9420720791790815 12.817447554781511 4.86596153107067 8 76.50154842598604 7.814544888171482 10.148612484905122 5.535294200937349 9 69.78738725618106 8.314572195488022 12.134764641272886 9.76327590705803 10 37.835197310532735 27.812603034550836 18.996183043976917 15.356016610939513 11 29.505049830795777 23.126060686971172 27.506356536461336 19.862532945771715 12 25.72713315654374 20.554116021708303 31.48857239371891 22.23017842802904 13 24.482728627979277 22.22006460708817 33.02830049375674 20.268906271175812 14 20.837303008052626 27.036266139129765 29.83617632839981 22.2902545244178 15 19.74986498049044 24.64171789316973 34.36069526450676 21.247721861833067 16 21.775865591365225 23.595544255046292 31.07046703602341 23.558123117565078 17 21.340769014489062 24.60025122731217 29.696605599415825 24.36237415878294 18 22.003224286115948 23.842321486003485 30.249831604881333 23.904622622999234 19 22.58638720156643 25.065486990592124 28.048659615310704 24.29946619253074 20 23.767276934622238 25.454464543977927 29.762952264787923 21.01530625661191 21 22.884340366484416 27.312575727234297 28.804364316012403 20.998719590268884 22 21.798722826691588 23.499665232526855 28.855944802810836 25.845667137970725 23 21.682413885871597 25.896438519093884 29.133063496590633 23.288084098443885 24 22.066334528786967 24.367431069253378 29.376806581265562 24.18942782069409 25 21.181172920042155 27.701148727782467 27.361122067750465 23.756556284424917 26 20.17039765521175 25.636311044494743 29.454278449672618 24.739012850620888 27 23.164088653708838 24.93704146464309 28.03975945288274 23.859110428765327 28 19.47072352252247 26.329107778944238 30.051398438021494 24.1487702605118 29 21.194725440102918 24.458860010558826 30.26480005987382 24.081614489464435 30 22.058648024871907 25.373149423613345 28.91217764724206 23.656024904272684 31 22.744971913919247 26.077071361097794 25.85901738161267 25.31893934337029 32 22.87786752108226 26.522079482496007 28.209267091851697 22.39078590457003 33 23.365960519688574 25.039191056145864 25.104728615842692 26.490119808322866 34 20.771765448355797 25.293654791018117 28.722846919229006 25.211732841397083 35 21.985626237678837 24.37269025614263 27.732906125536793 25.90877738064174 36 21.83776217552334 27.31520532067892 26.346098998124894 24.500933505672844 37 20.474823665531897 26.63272468358911 28.295234569849082 24.59721708102991 38 21.21090755360831 27.951971487116 26.340232981979195 24.496887977296495 39 22.795743295042406 24.146747496323627 28.007192949453145 25.05031625918082 40 22.730408011764396 24.159693187127935 28.784136674130668 24.325762126977 41 19.682506933024253 25.621747142339895 26.82529183430325 27.870454090332604 42 20.107894241797187 26.009915590050426 28.534123020472396 25.34806714767999 43 21.898242824749733 23.75493807307438 28.422061884447576 25.924757217728317 44 22.28337712617801 23.79397742190613 28.8800156966501 25.04262975526576 45 21.69010038978666 23.258349464877735 28.492858631033652 26.55869151430195 46 23.43089125012895 24.8532990272527 27.67849376887492 24.03731595374343 47 20.079575543162754 24.614208300210567 31.00027711869378 24.305939037932898 48 20.454596023650158 24.785940979786517 28.98216528815287 25.77729770841045 49 21.315282185718072 23.409854502571946 30.630718101514443 24.64414521019554 50 21.81146624107708 22.377637937346904 29.998402016291344 25.812493805284674 51 21.259858446962113 22.379862977953895 27.773563685719083 28.586714889364913 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 182.0 1 621.0 2 1060.0 3 2900.5 4 4741.0 5 3145.0 6 1549.0 7 1511.5 8 1474.0 9 1433.0 10 1392.0 11 1391.0 12 1390.0 13 1346.5 14 1303.0 15 1239.5 16 1176.0 17 1174.0 18 1172.0 19 1188.0 20 1204.0 21 1306.5 22 1409.0 23 1508.0 24 1607.0 25 2110.0 26 3293.0 27 3973.0 28 4828.5 29 5684.0 30 6400.0 31 7116.0 32 8641.0 33 10166.0 34 10629.5 35 11093.0 36 12092.0 37 13091.0 38 14274.0 39 15457.0 40 17227.5 41 18998.0 42 21270.5 43 23543.0 44 26773.0 45 30003.0 46 40928.5 47 51854.0 48 50732.0 49 49610.0 50 48214.5 51 46819.0 52 41072.5 53 35326.0 54 31438.5 55 27551.0 56 25214.0 57 22877.0 58 21919.0 59 20961.0 60 20127.0 61 19293.0 62 18087.0 63 16881.0 64 15015.5 65 13150.0 66 11304.0 67 9458.0 68 7949.5 69 6441.0 70 5347.5 71 4254.0 72 3756.5 73 3259.0 74 2700.5 75 1782.5 76 1423.0 77 1176.5 78 930.0 79 667.5 80 405.0 81 287.0 82 169.0 83 142.0 84 115.0 85 69.5 86 24.0 87 26.0 88 28.0 89 17.0 90 6.0 91 3.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 494373.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.03463680605398 #Duplication Level Percentage of deduplicated Percentage of total 1 72.17057305733564 23.119580959765322 2 9.12772100208274 5.8480645433742335 3 3.403399928228622 3.2708004181966226 4 1.9333354281390869 2.477347930588501 5 1.3895810605162182 2.225736229310418 6 1.1383533554426069 2.1880041779134065 7 0.9756685720509096 2.1878631844112535 8 0.8466394119854113 2.1697428854915 9 0.8106594945398785 2.3372264232867876 >10 8.084418193466561 45.71655375148125 >50 0.06520635507866802 1.3756068236818506 >100 0.04558114141421454 2.6875337796597205 >500 0.00506457126824606 1.0949286806808656 >1k 0.0037984284511845454 3.3010102121582605 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC 3465 0.7008877912021895 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG 3392 0.6861216126285213 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC 3367 0.6810647021580871 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2848 0.5760832407918718 No Hit GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 2194 0.44379446288531127 TruSeq Adapter, Index 13 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGCT 1011 0.2045014594243618 TruSeq Adapter, Index 16 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 975 0.1972195083469364 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCC 749 0.15150503769421064 No Hit TCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC 747 0.1511004848565759 TruSeq Adapter, Index 13 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT 674 0.13633430628290785 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCATGCACT 617 0.12480455041031771 No Hit GAACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT 599 0.12116357487160505 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTA 532 0.10761105481084121 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 506 0.10235186792158957 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.022764188173707E-4 0.0 0.0 0.20733332928780496 0.0 2 2.022764188173707E-4 0.0 0.0 1.109283880794461 0.0 3 2.022764188173707E-4 0.0 0.0 1.4834952556065966 0.0 4 2.022764188173707E-4 0.0 0.0 2.041373618704905 0.0 5 2.022764188173707E-4 0.0 0.0 3.9269943949204347 0.0 6 2.022764188173707E-4 0.0 0.0 4.770284784970053 0.0 7 2.022764188173707E-4 0.0 0.0 5.648771271893894 0.0 8 2.022764188173707E-4 0.0 0.0 6.91846035281053 0.0 9 2.022764188173707E-4 0.0 0.0 7.441749448291068 0.0 10 2.022764188173707E-4 0.0 0.0 9.087268115370378 0.0 11 2.022764188173707E-4 0.0 0.0 10.408335406666627 0.0 12 2.022764188173707E-4 0.0 0.0 12.113323340878244 0.0 13 2.022764188173707E-4 0.0 0.0 12.571883982337223 0.0 14 2.022764188173707E-4 0.0 0.0 12.755753247042213 0.0 15 2.022764188173707E-4 0.0 0.0 13.16758803575438 0.0 16 2.022764188173707E-4 0.0 0.0 13.821749974209757 0.0 17 2.022764188173707E-4 0.0 0.0 14.57846605700554 0.0 18 2.022764188173707E-4 0.0 0.0 15.406181162806222 0.0 19 2.022764188173707E-4 0.0 0.0 16.017460500472314 0.0 20 2.022764188173707E-4 0.0 0.0 16.507576263266806 0.0 21 2.022764188173707E-4 0.0 0.0 17.069095601903825 0.0 22 2.022764188173707E-4 0.0 0.0 17.683813638689816 0.0 23 2.022764188173707E-4 0.0 0.0 18.24735574151501 0.0 24 2.022764188173707E-4 0.0 0.0 18.70510727729872 0.0 25 2.022764188173707E-4 0.0 0.0 19.14748580525231 0.0 26 2.022764188173707E-4 0.0 0.0 19.52918140756069 0.0 27 2.022764188173707E-4 0.0 0.0 19.938993432084683 0.0 28 2.022764188173707E-4 0.0 0.0 20.33929846492426 0.0 29 2.022764188173707E-4 0.0 0.0 20.751537806474058 0.0 30 2.022764188173707E-4 0.0 0.0 21.224257797250253 0.0 31 2.022764188173707E-4 0.0 0.0 21.63083339907317 0.0 32 2.022764188173707E-4 0.0 0.0 22.043477293460604 0.0 33 2.022764188173707E-4 0.0 0.0 22.44317549704373 0.0 34 2.022764188173707E-4 0.0 0.0 22.8317484975919 0.0 35 2.022764188173707E-4 0.0 0.0 23.25632670068956 0.0 36 2.022764188173707E-4 0.0 0.0 23.655418075016232 0.0 37 2.022764188173707E-4 0.0 0.0 24.07271432703647 0.0 38 2.022764188173707E-4 0.0 0.0 24.46958066075615 0.0 39 2.022764188173707E-4 0.0 0.0 24.897799839392523 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 25 3.887568E-5 45.000004 36 CGACGGT 30 2.1629821E-6 45.000004 28 CGAATAT 50 2.1827873E-11 45.000004 14 GTTACAC 20 7.0293824E-4 45.0 33 TCGTCGG 40 6.8012014E-9 45.0 2 TTACGCG 20 7.0293824E-4 45.0 1 GCATATT 65 0.0 41.538464 27 CGTATGG 55 6.002665E-11 40.909092 2 CTACGAA 55 6.002665E-11 40.909092 11 GCGTAAG 45 1.9244908E-8 40.0 1 CGTAAGG 85 0.0 39.705883 2 ATATTAG 70 0.0 38.57143 29 TACGGCT 380 0.0 38.486843 7 CGTTTTT 1330 0.0 38.402256 1 TATGGGC 125 0.0 37.800003 4 CTGAACG 30 1.1389809E-4 37.500004 12 ACGATTG 30 1.1389809E-4 37.500004 1 CCACTAA 30 1.1389809E-4 37.500004 21 CGCAGTA 30 1.1389809E-4 37.500004 37 CGATGAA 330 0.0 37.500004 19 >>END_MODULE