SRR3551493_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551493_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	534903
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12720	2.3780012450855574	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	3395	0.6346945147064047	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCG	2346	0.4385841919002137	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	1845	0.34492235040745706	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	1354	0.2531300067488872	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	1294	0.24191301974376664	TruSeq Adapter, Index 23 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC	1028	0.19218437735439883	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	949	0.17741534446432344	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	878	0.16414190984159743	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCC	854	0.15965511503954924	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	820	0.15329882240331424	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	812	0.15180322413596484	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	695	0.12993009947597975	TruSeq Adapter, Index 22 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	683	0.12768670207495564	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	603	0.11273071940146157	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAATG	20	7.029902E-4	45.0	1
TACGAAT	150	0.0	45.0	12
CGAATAT	150	0.0	45.0	14
CGATGTA	20	7.029902E-4	45.0	10
GCGTATG	25	3.888E-5	45.0	1
CGTTTTT	5210	0.0	43.833973	1
CTACGAA	155	0.0	43.548386	11
GCTACGA	155	0.0	43.548386	10
CCTATGC	155	0.0	42.09677	35
TATTAGT	60	3.6379788E-12	41.249996	30
CATACGA	160	0.0	40.78125	18
CACAACG	50	1.0786607E-9	40.5	12
ACATACG	165	0.0	39.545452	17
TTGCGAG	105	0.0	38.57143	1
ACGCTAG	35	6.2420277E-6	38.571426	1
CGGTCTA	35	6.2420277E-6	38.571426	31
CGTTTCT	140	0.0	38.571426	1
AGCTACG	170	0.0	38.38235	9
GTTTTTT	6175	0.0	37.676113	2
AATGGGC	150	0.0	37.5	4