SRR3551491_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551491_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	627853
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5796	0.9231460230340542	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC	5403	0.8605517533562793	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCG	5230	0.8329975328619916	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGC	4676	0.7447603180999374	No Hit
GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	2115	0.33686229101397935	No Hit
GAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	1112	0.17711152132744448	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	1051	0.16739587132656847	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	885	0.14095656148811905	No Hit
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	834	0.13283364099558337	Illumina Single End Adapter 2 (95% over 21bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	818	0.13028527378223884	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTC	795	0.1266219959130561	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCCATGGT	771	0.12279944509303929	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	711	0.11324306804299733	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	710	0.11308379509216329	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTA	646	0.10289032623878519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGAT	20	7.0308376E-4	45.000004	5
ATTCGCG	20	7.0308376E-4	45.000004	1
ACGATTG	25	3.888776E-5	45.0	1
TCGACAG	35	1.2107557E-7	45.0	1
CGTTTAT	50	2.1827873E-11	45.0	39
CGTTCGG	60	0.0	44.999996	45
CGCATCG	55	6.002665E-11	40.909092	21
CGTTTTT	2350	0.0	40.882977	1
AAACTAT	105	0.0	40.714287	6
TACGGCT	665	0.0	40.601505	7
CGGTCTA	40	3.4548793E-7	39.375004	31
GATGAAT	610	0.0	39.098362	20
GTCGAAT	70	0.0	38.571426	43
TAGTAAG	65	9.094947E-12	38.07692	1
GCATATT	65	9.094947E-12	38.07692	27
TCGTTTA	60	1.546141E-10	37.499996	38
ATTATCC	60	1.546141E-10	37.499996	45
CGATCAC	30	1.1393322E-4	37.499996	34
CGATGAA	580	0.0	37.24138	19
CCGATGA	550	0.0	37.227272	18