##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551491_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 627853 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.311087149380505 33.0 31.0 34.0 30.0 34.0 2 32.434620842776894 34.0 31.0 34.0 31.0 34.0 3 32.4477608612207 34.0 31.0 34.0 30.0 34.0 4 35.97940282199814 37.0 35.0 37.0 35.0 37.0 5 36.03229736897013 37.0 35.0 37.0 35.0 37.0 6 36.037094670249246 37.0 35.0 37.0 35.0 37.0 7 36.136442766061485 37.0 36.0 37.0 35.0 37.0 8 35.99330097968792 37.0 36.0 37.0 35.0 37.0 9 37.84907135906016 39.0 38.0 39.0 35.0 39.0 10 37.626019147794146 39.0 37.0 39.0 35.0 39.0 11 37.567655167690525 39.0 37.0 39.0 35.0 39.0 12 37.47813739840377 39.0 37.0 39.0 35.0 39.0 13 37.42190767584132 39.0 37.0 39.0 35.0 39.0 14 38.743396941640796 40.0 38.0 41.0 35.0 41.0 15 38.75508279804349 40.0 38.0 41.0 35.0 41.0 16 38.83037430736176 40.0 38.0 41.0 35.0 41.0 17 38.73378004086944 40.0 38.0 41.0 35.0 41.0 18 38.65618863014113 40.0 38.0 41.0 35.0 41.0 19 38.58356335001983 40.0 37.0 41.0 35.0 41.0 20 38.418217321570495 40.0 37.0 41.0 34.0 41.0 21 38.36651413627075 40.0 37.0 41.0 34.0 41.0 22 38.31547034098746 40.0 37.0 41.0 34.0 41.0 23 38.229181034414104 40.0 37.0 41.0 34.0 41.0 24 38.13966963604538 40.0 37.0 41.0 34.0 41.0 25 38.06869283096521 40.0 36.0 41.0 34.0 41.0 26 38.053471115054 40.0 36.0 41.0 34.0 41.0 27 37.995878016032414 40.0 36.0 41.0 34.0 41.0 28 37.89007140206386 40.0 36.0 41.0 34.0 41.0 29 37.844403068871216 40.0 36.0 41.0 33.0 41.0 30 37.70821195407205 40.0 36.0 41.0 33.0 41.0 31 37.7104369971952 40.0 36.0 41.0 33.0 41.0 32 37.49336867069203 40.0 35.0 41.0 33.0 41.0 33 37.3522576144416 40.0 35.0 41.0 33.0 41.0 34 37.18120483616388 40.0 35.0 41.0 32.0 41.0 35 37.072200021342574 40.0 35.0 41.0 32.0 41.0 36 36.9535560075368 40.0 35.0 41.0 32.0 41.0 37 36.853999264158965 39.0 35.0 41.0 31.0 41.0 38 36.69953794916963 39.0 35.0 41.0 31.0 41.0 39 36.609641110259886 39.0 35.0 41.0 31.0 41.0 40 36.4907295178967 39.0 35.0 41.0 31.0 41.0 41 36.41467349841444 39.0 35.0 41.0 30.0 41.0 42 36.30777586473267 39.0 35.0 41.0 30.0 41.0 43 36.24989766712909 39.0 35.0 41.0 31.0 41.0 44 36.226382608667954 39.0 35.0 41.0 31.0 41.0 45 36.15332410612038 39.0 35.0 41.0 30.0 41.0 46 36.091008564106566 38.0 35.0 41.0 30.0 41.0 47 35.98899264636786 38.0 35.0 41.0 30.0 41.0 48 35.94424809629005 38.0 35.0 41.0 30.0 41.0 49 35.89264206749032 38.0 35.0 40.0 30.0 41.0 50 35.781993555816406 38.0 35.0 40.0 30.0 41.0 51 34.95543065016811 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 15.0 10 23.0 11 20.0 12 26.0 13 22.0 14 32.0 15 27.0 16 42.0 17 106.0 18 170.0 19 314.0 20 578.0 21 1048.0 22 1765.0 23 2498.0 24 3266.0 25 4295.0 26 5592.0 27 6717.0 28 7002.0 29 7290.0 30 8125.0 31 9608.0 32 12424.0 33 17067.0 34 32624.0 35 47608.0 36 47061.0 37 69243.0 38 118389.0 39 224553.0 40 295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.05179715634074 19.042674001716964 22.36335575365571 15.54217308828659 2 30.830465092943733 28.392633307478025 23.71829074640083 17.058610853177417 3 29.896647782203793 26.820290736844456 26.7704383032334 16.512623177718353 4 27.776087714799484 22.96365550534918 30.51335264783317 18.746904132018162 5 27.598020555767032 27.52316226887504 25.160985135055498 19.717832040302426 6 25.25591181375258 35.90139730159766 24.20248051693629 14.640210367713461 7 74.33762361571897 6.560612117804646 14.107123801271953 4.9946404652044345 8 74.61969601164604 9.027909399174648 11.003212535418323 5.349182053760992 9 68.69776842668587 7.745284326108182 12.682108710159861 10.874838537046092 10 41.96061817017678 22.313344047093825 19.512688479628192 16.213349303101204 11 31.494155479069146 22.946294753708273 24.843394871092435 20.716154896130146 12 25.993823394966658 20.176219592802774 29.95621586581572 23.873741146414844 13 25.102531962099405 21.1156114568219 32.77248018246309 21.0093763986156 14 21.6163656142441 25.774663814619025 29.288702928870293 23.320267642266582 15 20.763140416626186 22.22813301839762 33.83546785632943 23.173258708646767 16 22.56515458236243 22.674734372536246 29.78579380842331 24.97431723667801 17 22.693847126636328 23.468869305394733 28.98273959031812 24.85454397765082 18 22.566906584821606 22.535689086458135 29.405609274782474 25.491795053937782 19 24.34375562432608 23.503590808676552 27.19665271966527 24.9560008473321 20 25.84872573675685 23.469824943099738 28.435318458301545 22.246130861841866 21 24.92446480306696 25.566016249026447 27.708874529547522 21.800644418359074 22 23.50390935457822 21.848107757707616 28.042710634495656 26.60527225321851 23 24.254562771859018 23.986187849703672 27.289190304099847 24.470059074337463 24 23.561725435730978 23.85542475706893 27.592127456586173 24.990722350613918 25 23.570326175076012 26.98832369997436 26.078875150712026 23.3624749742376 26 22.65355107007532 23.87979351854654 27.853175823003156 25.613479588374986 27 25.905586180204605 23.410575405389476 26.323199857291435 24.360638557114484 28 22.038598206905117 24.812177372728968 28.537890238638663 24.61133418172725 29 23.98188748003115 22.65546234548533 27.875314763169083 25.487335411314433 30 22.857261174192047 25.047901339963335 26.59523805731596 25.49959942852865 31 24.32846542104601 23.557106520156786 24.41383572269305 27.70059233610415 32 25.098868684230226 24.532016252211903 24.731107440754442 25.63800762280343 33 24.238954022677284 24.560048291558694 23.400222663585264 27.800775022178758 34 22.98372389715427 24.097041823484158 27.13103226392165 25.78820201543992 35 25.65329782608349 22.333093892997248 25.36278396376222 26.65082431715704 36 25.068925369473426 25.28028057523019 25.241736521128356 24.40905753416803 37 24.031262094789703 23.73055476361505 26.635215567975308 25.60296757361994 38 24.09831600709083 25.78867983429242 24.320820319405975 25.792183839210768 39 24.916660428476092 23.668756858691445 26.784295049955958 24.6302876628765 40 24.770129313708782 23.606003316062836 28.11135727630512 23.512510093923257 41 23.429847432440397 23.644388097213838 27.10570786473904 25.820056605606727 42 23.870555687398166 23.236330797177047 27.79806738201458 25.09504613341021 43 25.45261390803261 21.62225871342496 27.159860668022613 25.765266710519818 44 24.11965858250259 22.474369000387036 26.865364981930483 26.54060743517989 45 23.481133322608954 21.824694633935014 27.125457710642458 27.56871433281357 46 25.518234363776234 23.768939544766052 26.61673990567856 24.096086185779157 47 22.934827101248224 23.577812003765214 29.845202619084404 23.642158275902162 48 23.403726668503616 23.716538743941655 26.816468186024434 26.063266401530292 49 23.291120692263952 22.66071835286285 29.064924432948473 24.983236521924717 50 23.19141582504185 22.16936129953986 28.42178025748065 26.217442617937635 51 22.632049221712723 22.80406400861348 26.53965179747489 28.024234972198908 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 293.0 1 819.0 2 1345.0 3 5080.5 4 8816.0 5 5660.0 6 2504.0 7 2374.0 8 2244.0 9 2201.0 10 2158.0 11 2065.0 12 1972.0 13 1968.0 14 1964.0 15 1880.5 16 1797.0 17 1781.5 18 1766.0 19 1718.5 20 1671.0 21 1874.0 22 2077.0 23 2114.0 24 2151.0 25 2841.5 26 4003.5 27 4475.0 28 5483.5 29 6492.0 30 7203.0 31 7914.0 32 8457.0 33 9000.0 34 9825.0 35 10650.0 36 11184.0 37 11718.0 38 12631.5 39 13545.0 40 15678.5 41 17812.0 42 20090.5 43 22369.0 44 25830.5 45 29292.0 46 31468.0 47 33644.0 48 48729.0 49 63814.0 50 57452.5 51 51091.0 52 50538.5 53 49986.0 54 45170.0 55 40354.0 56 38099.0 57 35844.0 58 34621.0 59 33398.0 60 32309.5 61 31221.0 62 29321.5 63 27422.0 64 25818.5 65 24215.0 66 21181.5 67 18148.0 68 16197.5 69 14247.0 70 12908.5 71 11570.0 72 10352.0 73 9134.0 74 7769.5 75 5349.0 76 4293.0 77 3504.0 78 2715.0 79 2059.5 80 1404.0 81 1061.5 82 719.0 83 569.5 84 420.0 85 287.5 86 155.0 87 102.5 88 50.0 89 37.0 90 24.0 91 17.0 92 10.0 93 11.0 94 12.0 95 6.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 627853.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.790507971057156 #Duplication Level Percentage of deduplicated Percentage of total 1 71.59566317217292 21.328711744237406 2 7.934364346401908 4.727374886135155 3 3.125856001924663 2.7936251442514055 4 2.0070989405556414 2.3916998794929283 5 1.4851434219444106 2.2121588474799028 6 1.294381632293855 2.3136171800664034 7 1.0869153911356897 2.266583313644473 8 1.0269344180256013 2.447431837275569 9 0.9636383648510716 2.5836548750381096 >10 9.345016850231167 47.35777242121196 >50 0.07959419979495783 1.6277635606327974 >100 0.04517508637010081 2.5401763045106778 >500 0.0064535837671572584 1.3427447245729416 >1k 0.002151194589052419 1.434546744281842 >5k 0.0016133959417893146 2.6321385371684594 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5796 0.9231460230340542 No Hit GAATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTC 5403 0.8605517533562793 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCG 5230 0.8329975328619916 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGC 4676 0.7447603180999374 No Hit GCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 2115 0.33686229101397935 No Hit GAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT 1112 0.17711152132744448 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 1051 0.16739587132656847 No Hit CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 885 0.14095656148811905 No Hit CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 834 0.13283364099558337 Illumina Single End Adapter 2 (95% over 21bp) TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 818 0.13028527378223884 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTC 795 0.1266219959130561 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCCATGGT 771 0.12279944509303929 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 711 0.11324306804299733 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 710 0.11308379509216329 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTA 646 0.10289032623878519 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13649691886476611 0.0 2 0.0 0.0 0.0 0.737911581214074 0.0 3 0.0 0.0 0.0 1.039733823044566 0.0 4 0.0 0.0 0.0 1.5215344993175155 0.0 5 0.0 0.0 0.0 3.2053681355349104 0.0 6 0.0 0.0 0.0 4.025623832330179 0.0 7 0.0 0.0 0.0 4.816891852073654 0.0 8 0.0 0.0 0.0 5.925909408731025 0.0 9 0.0 0.0 0.0 6.432397392383249 0.0 10 0.0 0.0 0.0 8.074342242531293 0.0 11 0.0 0.0 0.0 8.971208228677732 0.0 12 0.0 0.0 0.0 10.455950676352586 0.0 13 0.0 0.0 0.0 10.79934315835076 0.0 14 0.0 0.0 0.0 10.965146300168989 0.0 15 0.0 0.0 0.0 11.291496576427923 0.0 16 0.0 0.0 0.0 11.7341161067957 0.0 17 0.0 0.0 0.0 12.231047713397881 0.0 18 0.0 0.0 0.0 12.815579442958782 0.0 19 0.0 0.0 0.0 13.26456989135992 0.0 20 0.0 0.0 0.0 13.608280919259762 0.0 21 0.0 0.0 0.0 13.978271984047222 0.0 22 0.0 0.0 0.0 14.389514743100694 0.0 23 0.0 0.0 0.0 14.765876725921514 0.0 24 0.0 0.0 0.0 15.114684488248045 0.0 25 0.0 0.0 0.0 15.422240556308562 0.0 26 0.0 0.0 0.0 15.70176458502229 0.0 27 0.0 0.0 0.0 16.006613012918628 0.0 28 0.0 0.0 0.0 16.3036570662241 0.0 29 0.0 0.0 0.0 16.60022330067707 0.0 30 0.0 0.0 0.0 16.938996867101057 0.0 31 1.592729508340328E-4 0.0 0.0 17.228714364668164 0.0 32 3.185459016680656E-4 0.0 0.0 17.537385343384518 0.0 33 3.185459016680656E-4 0.0 0.0 17.83442939668999 0.0 34 3.185459016680656E-4 0.0 0.0 18.123350529502925 0.0 35 3.185459016680656E-4 0.0 0.0 18.437436788547636 0.0 36 3.185459016680656E-4 0.0 0.0 18.72747283201641 0.0 37 3.185459016680656E-4 0.0 0.0 19.01957942384603 0.0 38 3.185459016680656E-4 0.0 0.0 19.312960199282315 0.0 39 3.185459016680656E-4 0.0 0.0 19.609844979636954 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGAT 20 7.0308376E-4 45.000004 5 ATTCGCG 20 7.0308376E-4 45.000004 1 ACGATTG 25 3.888776E-5 45.0 1 TCGACAG 35 1.2107557E-7 45.0 1 CGTTTAT 50 2.1827873E-11 45.0 39 CGTTCGG 60 0.0 44.999996 45 CGCATCG 55 6.002665E-11 40.909092 21 CGTTTTT 2350 0.0 40.882977 1 AAACTAT 105 0.0 40.714287 6 TACGGCT 665 0.0 40.601505 7 CGGTCTA 40 3.4548793E-7 39.375004 31 GATGAAT 610 0.0 39.098362 20 GTCGAAT 70 0.0 38.571426 43 TAGTAAG 65 9.094947E-12 38.07692 1 GCATATT 65 9.094947E-12 38.07692 27 TCGTTTA 60 1.546141E-10 37.499996 38 ATTATCC 60 1.546141E-10 37.499996 45 CGATCAC 30 1.1393322E-4 37.499996 34 CGATGAA 580 0.0 37.24138 19 CCGATGA 550 0.0 37.227272 18 >>END_MODULE