SRR3551490_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551490_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	327981
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	2934	0.8945640143788817	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	2928	0.8927346401163482	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	2622	0.7994365527271396	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2089	0.6369271390720804	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1607	0.48996740664855587	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	744	0.22684240855415405	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	638	0.19452346324939557	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	633	0.1929989846972843	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTACAGT	613	0.18690107048883928	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCC	512	0.15610660373619203	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	488	0.14878910668605802	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	481	0.14665483671310228	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	429	0.1308002597711453	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTA	409	0.12470234556270028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	20	7.0259057E-4	45.0	21
TAACGCC	20	7.0259057E-4	45.0	12
CCTAAGA	20	7.0259057E-4	45.0	31
CGCCTAA	20	7.0259057E-4	45.0	29
CTACGAA	40	6.7902874E-9	45.0	11
TACGAAT	40	6.7902874E-9	45.0	12
TGCGACG	20	7.0259057E-4	45.0	1
CATACGA	50	2.1827873E-11	45.0	18
GCGATAT	25	3.884689E-5	45.0	9
CGTAAGG	35	1.2083729E-7	45.0	2
CGATGCG	20	7.0259057E-4	45.0	10
CCGCCTA	20	7.0259057E-4	45.0	28
AACAGCG	20	7.0259057E-4	45.0	1
TGCGTTG	25	3.884689E-5	45.0	1
ATCGACC	20	7.0259057E-4	45.0	23
CCATTAC	40	6.7902874E-9	45.0	6
TAATCCA	75	0.0	42.0	42
CGTTTTT	920	0.0	40.842392	1
CAATAGG	50	1.0768417E-9	40.5	2
CATTACA	45	1.9210347E-8	40.000004	7