SRR3551488_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551488_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392156
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4344	1.1077224369893615	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC	746	0.1902304185069207	No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	724	0.18462040616489356	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	530	0.13515029733065415	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	422	0.10761023674252083	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	417	0.10633523393751465	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	406	0.10353022776650109	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	50	2.1827873E-11	45.0	38
CGCATCG	55	1.8189894E-12	45.0	21
ATAGCCG	20	7.0275966E-4	45.0	1
TCCTCGG	20	7.0275966E-4	45.0	16
CGTCTAT	25	3.886089E-5	45.0	36
GTCGTTT	20	7.0275966E-4	45.0	9
CGGTCTA	25	3.886089E-5	45.0	31
CCGGTAT	35	1.2091914E-7	45.0	42
CGGTATT	35	1.2091914E-7	45.0	43
AGGGCGT	20	7.0275966E-4	45.0	6
TCAAGCG	50	2.1827873E-11	45.0	17
CGTTTAT	50	2.1827873E-11	45.0	39
TGCAACG	20	7.0275966E-4	45.0	1
ACGAACG	20	7.0275966E-4	45.0	1
TCGGCGT	120	0.0	43.125004	4
GCGTCCC	130	0.0	41.53846	7
CGTTTTT	1875	0.0	41.4	1
AACGCCG	55	6.002665E-11	40.909092	13
TGGTCAA	55	6.002665E-11	40.909092	14
ACACGAC	50	1.0768417E-9	40.5	26