##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551488_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 392156 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.421793877946534 33.0 31.0 34.0 31.0 34.0 2 32.52438570364855 34.0 31.0 34.0 31.0 34.0 3 32.50281520619345 34.0 31.0 34.0 31.0 34.0 4 36.030013566029844 37.0 35.0 37.0 35.0 37.0 5 36.10025092055203 37.0 35.0 37.0 35.0 37.0 6 36.089839247646346 37.0 36.0 37.0 35.0 37.0 7 36.26023062250737 37.0 37.0 37.0 35.0 37.0 8 36.11551270412795 37.0 37.0 37.0 35.0 37.0 9 38.023942002672406 39.0 39.0 39.0 35.0 39.0 10 37.672362529197564 39.0 37.0 39.0 35.0 39.0 11 37.672056528524365 39.0 37.0 39.0 35.0 39.0 12 37.58934199655239 39.0 37.0 39.0 35.0 39.0 13 37.586210589663295 39.0 37.0 39.0 35.0 39.0 14 38.88699395138669 40.0 38.0 41.0 35.0 41.0 15 38.951521843348054 40.0 38.0 41.0 35.0 41.0 16 38.949469088832 40.0 38.0 41.0 35.0 41.0 17 38.903581737879826 40.0 38.0 41.0 35.0 41.0 18 38.77693315925295 40.0 38.0 41.0 35.0 41.0 19 38.65685849508869 40.0 37.0 41.0 35.0 41.0 20 38.54952365895205 40.0 37.0 41.0 35.0 41.0 21 38.442492273483005 40.0 37.0 41.0 35.0 41.0 22 38.44163037158682 40.0 37.0 41.0 35.0 41.0 23 38.42542508593519 40.0 37.0 41.0 35.0 41.0 24 38.360960944114076 40.0 37.0 41.0 35.0 41.0 25 38.19016411836106 40.0 36.0 41.0 34.0 41.0 26 38.19866838707045 40.0 36.0 41.0 34.0 41.0 27 38.20141729311805 40.0 36.0 41.0 34.0 41.0 28 38.13204694050327 40.0 36.0 41.0 34.0 41.0 29 38.07644916818817 40.0 36.0 41.0 34.0 41.0 30 37.901796733952814 40.0 36.0 41.0 34.0 41.0 31 37.847468864431505 40.0 36.0 41.0 34.0 41.0 32 37.68961841716052 40.0 36.0 41.0 33.0 41.0 33 37.51177847591265 40.0 36.0 41.0 33.0 41.0 34 37.367705708952556 40.0 35.0 41.0 33.0 41.0 35 37.216128275482205 40.0 35.0 41.0 33.0 41.0 36 37.08502228704903 40.0 35.0 41.0 33.0 41.0 37 37.03894623568172 40.0 35.0 41.0 32.0 41.0 38 36.93002274605004 40.0 35.0 41.0 32.0 41.0 39 36.89679872295719 40.0 35.0 41.0 32.0 41.0 40 36.80211191464621 40.0 35.0 41.0 32.0 41.0 41 36.689549567009045 39.0 35.0 41.0 31.0 41.0 42 36.563046338701945 39.0 35.0 41.0 31.0 41.0 43 36.43924866634707 39.0 35.0 41.0 31.0 41.0 44 36.452059894531764 39.0 35.0 41.0 31.0 41.0 45 36.41807341976153 39.0 35.0 41.0 31.0 41.0 46 36.33719744183437 39.0 35.0 41.0 31.0 41.0 47 36.29659115250053 39.0 35.0 41.0 31.0 41.0 48 36.23632941992472 39.0 35.0 41.0 31.0 41.0 49 36.187392262262975 39.0 35.0 41.0 31.0 41.0 50 36.102431175348585 38.0 35.0 41.0 31.0 41.0 51 35.28864788502535 37.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 3.0 10 6.0 11 8.0 12 4.0 13 6.0 14 14.0 15 27.0 16 25.0 17 48.0 18 82.0 19 146.0 20 238.0 21 381.0 22 627.0 23 991.0 24 1477.0 25 2550.0 26 3692.0 27 4485.0 28 4531.0 29 4581.0 30 4719.0 31 5531.0 32 6844.0 33 9714.0 34 19190.0 35 29795.0 36 27304.0 37 40558.0 38 72020.0 39 152371.0 40 184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.76682748702047 20.65887044951499 24.482603861728496 15.091698201736046 2 35.71180856597885 22.808525178755392 24.331388529054763 17.148277726211 3 32.09513560929834 22.370179214394273 28.953273697202135 16.581411479105252 4 28.526912759208074 24.331898530176765 28.549097808015176 18.592090902599985 5 25.188445414579913 28.965258723569193 26.69294872448719 19.153347137363703 6 25.626026377258032 33.806189373616625 26.236242719733983 14.331541529391364 7 77.8514162731158 6.088393394465467 11.524240353328777 4.535949979089954 8 78.17577698670937 5.897397974275544 11.192484623466171 4.734340415548914 9 72.10523363151398 7.941482471261437 13.638195004029008 6.315088893195566 10 39.391211660665654 23.24993114984853 21.509042319893105 15.849814869592713 11 31.134038494884685 23.220096084211388 25.259590571099256 20.38627484980467 12 26.40785809728781 21.307081875580124 31.455339201746245 20.829720825385817 13 24.579249074347963 22.579534674976284 32.76731708809759 20.073899162578158 14 21.780617917359418 25.116025255255565 31.85747508644519 21.24588174093983 15 20.971501137302504 23.565111843246058 34.06552494415488 21.397862075296565 16 23.673997082793584 22.567549648609226 31.88629014983833 21.872163118758863 17 23.468721631187588 22.81974520343945 29.852915676414487 23.858617488958476 18 23.668897071573557 22.806740174828384 31.20747865645304 22.316884097145014 19 24.39870867715909 24.560889033955874 28.943073674762083 22.09732861412295 20 24.79523454951601 24.995919991023978 29.308744479237852 20.900100980222156 21 24.85923969032732 24.38187864013301 29.84705066351146 20.911831006028216 22 23.444496577892473 23.265741184630606 28.94766368486011 24.342098552616818 23 22.980140556309223 24.404318689501117 29.324044512897927 23.291496241291732 24 22.851875274125604 24.67385428247942 30.046461102214423 22.427809341180552 25 23.15277593610706 24.94466487826273 28.935933659054047 22.96662552657616 26 21.777557910627404 24.980874957924907 29.23377431430349 24.007792817144196 27 23.57837187241812 24.472658839849448 29.836085639388404 22.112883648344024 28 21.602117524658553 24.583584083884986 31.207733657014046 22.606564734442415 29 22.53949958689909 24.1941982272361 30.128826283417826 23.137475902446987 30 22.71085996389192 24.932169850773672 29.409979701955347 22.94699048337906 31 23.79537734983017 25.130560287232633 28.269617193157824 22.804445169779374 32 24.04757290466039 25.078540172788383 28.056946725282796 22.816940197268433 33 23.083670784075725 25.964157121145664 26.801068962351714 24.15110313242689 34 22.20825385815849 24.78120951866094 28.981323758912268 24.029212864268302 35 23.102285825028815 24.419363722600192 28.08678179091994 24.391568661451053 36 22.888850355470783 26.84110405042891 27.585450687991514 22.684594906108792 37 22.244718938381663 26.789848937667664 28.889523556951822 22.075908566998848 38 22.52878956333704 26.307897877375332 27.576270667795473 23.58704189149216 39 23.045930701047542 24.86816470996236 28.27675720886586 23.809147380124237 40 21.985128367282407 24.071797957955507 30.014841032650274 23.928232642111812 41 20.553300217260478 25.252960556513226 28.527167759769075 25.666571466457228 42 21.32008690419119 26.383378043431694 28.860708493558683 23.43582655881843 43 22.505074511163926 24.426758738869225 29.401819684003307 23.666347065963546 44 22.701679943695876 23.79333734534216 29.012688827915422 24.492293883046543 45 23.232336111139446 23.948887687552915 28.2229520904946 24.595824110813044 46 22.975550546211203 24.571599057517926 29.01039382286641 23.44245657340446 47 21.544487397872274 24.55808402778486 30.508522118748658 23.388906455594203 48 21.24613674150083 25.07446016381236 29.438539764787482 24.240863329899327 49 22.05576352267975 24.239843327655322 30.108171237976723 23.596221911688207 50 21.263986780770917 23.467446628382582 30.209661461255216 25.058905129591285 51 21.47640224808495 24.19674823284611 28.465712624567775 25.86113689450117 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 228.0 1 577.5 2 927.0 3 3806.5 4 6686.0 5 4330.5 6 1975.0 7 1958.0 8 1941.0 9 1960.5 10 1980.0 11 2006.0 12 2032.0 13 1900.5 14 1769.0 15 1616.0 16 1463.0 17 1430.5 18 1398.0 19 1331.0 20 1264.0 21 1373.0 22 1482.0 23 1536.0 24 1590.0 25 1831.0 26 2584.0 27 3096.0 28 3433.5 29 3771.0 30 4671.5 31 5572.0 32 6171.5 33 6771.0 34 7399.5 35 8028.0 36 8540.0 37 9052.0 38 10259.0 39 11466.0 40 13158.0 41 14850.0 42 17187.5 43 19525.0 44 23399.0 45 27273.0 46 30152.5 47 33032.0 48 34306.0 49 35580.0 50 31489.0 51 27398.0 52 25473.5 53 23549.0 54 21946.5 55 20344.0 56 20483.5 57 20623.0 58 19782.5 59 18942.0 60 18434.5 61 17927.0 62 16170.0 63 14413.0 64 13830.0 65 13247.0 66 11114.5 67 8982.0 68 7810.0 69 6638.0 70 5966.0 71 5294.0 72 4532.5 73 3771.0 74 3258.0 75 2167.0 76 1589.0 77 1266.0 78 943.0 79 732.0 80 521.0 81 373.0 82 225.0 83 191.5 84 158.0 85 86.5 86 15.0 87 9.5 88 4.0 89 2.0 90 0.0 91 1.5 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 392156.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.662904850525535 #Duplication Level Percentage of deduplicated Percentage of total 1 71.61984031372012 24.82551710204313 2 8.312276833140846 5.762553219167777 3 3.3429487395218285 3.4762894223468823 4 2.1474673763141405 2.977498293391391 5 1.6990782519085121 2.9447493889751004 6 1.5083792758270422 3.137088438989842 7 1.3062883830961929 3.1695824951427127 8 1.155750363639414 3.2049331908634633 9 1.0728350127793154 3.3468820171453584 >10 7.730962996594941 41.442482460217946 >50 0.06206018503860771 1.4884160371028263 >100 0.03915702151245486 2.599350099207448 >500 0.0022164351799502753 0.5121872116664922 >1k 7.388117266500918E-4 1.1124706237396211 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4344 1.1077224369893615 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCC 746 0.1902304185069207 No Hit GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 724 0.18462040616489356 No Hit CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 530 0.13515029733065415 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 422 0.10761023674252083 No Hit CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT 417 0.10633523393751465 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 406 0.10353022776650109 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10914024010852824 0.0 2 0.0 0.0 0.0 0.5678862493497485 0.0 3 0.0 0.0 0.0 0.8313018288640235 0.0 4 0.0 0.0 0.0 1.1571925458236008 0.0 5 0.0 0.0 0.0 2.1216046675302684 0.0 6 0.0 0.0 0.0 2.7364110201042444 0.0 7 0.0 0.0 0.0 3.3071022756250064 0.0 8 0.0 0.0 0.0 4.228929303644468 0.0 9 0.0 0.0 0.0 4.628260182172401 0.0 10 0.0 0.0 0.0 5.511582125480676 0.0 11 0.0 0.0 0.0 6.7853099276818405 0.0 12 0.0 0.0 0.0 7.715806974775345 0.0 13 0.0 0.0 0.0 8.084282785422127 0.0 14 0.0 0.0 0.0 8.222748090045798 0.0 15 0.0 0.0 0.0 8.512683727904202 0.0 16 0.0 0.0 0.0 9.038494884688747 0.0 17 0.0 0.0 0.0 9.686706310753884 0.0 18 0.0 0.0 0.0 10.419832923632432 0.0 19 0.0 0.0 0.0 10.845938861065495 0.0 20 0.0 0.0 0.0 11.26872979120554 0.0 21 0.0 0.0 0.0 11.748895847570864 0.0 22 0.0 0.0 0.0 12.290772039698487 0.0 23 5.100011220024684E-4 0.0 0.0 12.83672824080213 0.0 24 5.100011220024684E-4 0.0 0.0 13.287569232652311 0.0 25 5.100011220024684E-4 0.0 0.0 13.686390110058243 0.0 26 5.100011220024684E-4 0.0 0.0 14.036505880312937 0.0 27 5.100011220024684E-4 0.0 0.0 14.40498169095972 0.0 28 5.100011220024684E-4 0.0 0.0 14.772437499362498 0.0 29 5.100011220024684E-4 0.0 0.0 15.168963371719418 0.0 30 5.100011220024684E-4 0.0 0.0 15.582319281102418 0.0 31 5.100011220024684E-4 0.0 0.0 15.955385101847224 0.0 32 5.100011220024684E-4 0.0 0.0 16.34145595120309 0.0 33 5.100011220024684E-4 0.0 0.0 16.711206764654882 0.0 34 5.100011220024684E-4 0.0 0.0 17.071522557349628 0.0 35 5.100011220024684E-4 0.0 0.0 17.462693417925518 0.0 36 5.100011220024684E-4 0.0 0.0 17.83269923193831 0.0 37 5.100011220024684E-4 0.0 0.0 18.191740021828046 0.0 38 5.100011220024684E-4 0.0 0.0 18.55970583135283 0.0 39 5.100011220024684E-4 0.0 0.0 18.93991166780567 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 50 2.1827873E-11 45.0 38 CGCATCG 55 1.8189894E-12 45.0 21 ATAGCCG 20 7.0275966E-4 45.0 1 TCCTCGG 20 7.0275966E-4 45.0 16 CGTCTAT 25 3.886089E-5 45.0 36 GTCGTTT 20 7.0275966E-4 45.0 9 CGGTCTA 25 3.886089E-5 45.0 31 CCGGTAT 35 1.2091914E-7 45.0 42 CGGTATT 35 1.2091914E-7 45.0 43 AGGGCGT 20 7.0275966E-4 45.0 6 TCAAGCG 50 2.1827873E-11 45.0 17 CGTTTAT 50 2.1827873E-11 45.0 39 TGCAACG 20 7.0275966E-4 45.0 1 ACGAACG 20 7.0275966E-4 45.0 1 TCGGCGT 120 0.0 43.125004 4 GCGTCCC 130 0.0 41.53846 7 CGTTTTT 1875 0.0 41.4 1 AACGCCG 55 6.002665E-11 40.909092 13 TGGTCAA 55 6.002665E-11 40.909092 14 ACACGAC 50 1.0768417E-9 40.5 26 >>END_MODULE