SRR3551483_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551483_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	721454
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12909	1.7893032681224306	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	7542	1.045388895203298	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	6049	0.8384456943893859	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGC	4593	0.6366310256786989	No Hit
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	2547	0.3530370612679395	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCT	1934	0.26806975912532194	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCT	1408	0.19516143787407098	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCC	1219	0.16896434145489525	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTC	1074	0.14886603996928427	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTT	940	0.13029243721706443	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	896	0.12419364228349972	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	888	0.12308477047739702	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCCAGGTT	863	0.11961954608332617	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTA	837	0.11601571271349248	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTT	807	0.11185744344060745	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATCG	70	0.0	45.0	40
TCTCGAG	20	7.0315396E-4	45.0	1
CGTGTAC	25	3.8893573E-5	45.0	18
TATAGCG	20	7.0315396E-4	45.0	1
CGGTCTA	25	3.8893573E-5	45.0	31
CGGTATT	20	7.0315396E-4	45.0	43
CGATCGA	90	0.0	45.0	41
CGTTTTT	5300	0.0	43.64151	1
TAAACGG	45	1.9266736E-8	40.0	2
GCGATAA	45	1.9266736E-8	40.0	9
TTGGACG	40	3.4558434E-7	39.375	1
CGTAAGG	40	3.4558434E-7	39.375	2
ATAACGC	40	3.4558434E-7	39.375	11
CAACGAT	35	6.2450563E-6	38.571426	38
ACGTAGG	70	0.0	38.571426	2
TATACGG	35	6.2450563E-6	38.571426	2
TAATGCG	35	6.2450563E-6	38.571426	1
CCGATGA	655	0.0	37.78626	18
GCTACGA	90	0.0	37.5	10
CAAACGA	30	1.1395008E-4	37.499996	15