SRR3551479_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551479_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	514623
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3387	0.658151695513026	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	2582	0.5017265065883181	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1168	0.22696226169448314	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	1131	0.21977253251409282	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	830	0.16128311404659332	No Hit
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	828	0.1608944800368425	No Hit
GTGAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	807	0.1568138229344588	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCC	798	0.1550649698905801	No Hit
GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	780	0.15156726380282265	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	764	0.14845819172481603	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	589	0.11445271587161865	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	560	0.10881752273023165	No Hit
CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA	559	0.10862320572535622	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	25	3.8877915E-5	45.000004	1
CAACGCT	20	7.029651E-4	45.0	24
GACGTAT	20	7.029651E-4	45.0	9
TAGCGAT	20	7.029651E-4	45.0	1
ACTAGTC	20	7.029651E-4	45.0	43
GTTAACG	35	1.2101737E-7	45.0	1
CGGTCTA	45	3.8380676E-10	45.0	31
TTCGCAC	20	7.029651E-4	45.0	11
TAGTACG	20	7.029651E-4	45.0	1
GTACGAG	45	3.8380676E-10	45.0	1
AAATGCG	20	7.029651E-4	45.0	1
TCATCGA	30	2.1631568E-6	44.999996	16
TATAGCG	30	2.1631568E-6	44.999996	1
TCGACAA	30	2.1631568E-6	44.999996	19
CACAACG	70	0.0	41.785713	12
CGTGTAC	65	0.0	41.538464	18
CGAATAT	165	0.0	40.90909	14
GACCTAT	155	0.0	40.645164	33
CGTTTTT	1600	0.0	40.35938	1
TCGGCGT	140	0.0	40.17857	4