##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551479_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 514623 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.24645614362358 33.0 31.0 34.0 30.0 34.0 2 32.31785404072496 34.0 31.0 34.0 30.0 34.0 3 32.32665854421586 34.0 31.0 34.0 30.0 34.0 4 35.891281578942255 37.0 35.0 37.0 35.0 37.0 5 35.96683397360786 37.0 35.0 37.0 35.0 37.0 6 35.95965590344777 37.0 35.0 37.0 35.0 37.0 7 36.14204184422383 37.0 35.0 37.0 35.0 37.0 8 35.94573503321849 37.0 35.0 37.0 35.0 37.0 9 37.85474609568558 39.0 38.0 39.0 35.0 39.0 10 37.51833089465492 39.0 37.0 39.0 35.0 39.0 11 37.53386653919471 39.0 37.0 39.0 35.0 39.0 12 37.484292384910894 39.0 37.0 39.0 35.0 39.0 13 37.46627531221885 39.0 37.0 39.0 35.0 39.0 14 38.68437477532096 40.0 38.0 41.0 35.0 41.0 15 38.75803646552914 40.0 38.0 41.0 35.0 41.0 16 38.75673065525637 40.0 38.0 41.0 35.0 41.0 17 38.72975362546952 40.0 38.0 41.0 35.0 41.0 18 38.64304743472406 40.0 38.0 41.0 35.0 41.0 19 38.56589969744842 40.0 38.0 41.0 35.0 41.0 20 38.47158793913214 40.0 37.0 41.0 34.0 41.0 21 38.35578666324669 40.0 37.0 41.0 34.0 41.0 22 38.38139570131922 40.0 37.0 41.0 34.0 41.0 23 38.35153695035006 40.0 37.0 41.0 34.0 41.0 24 38.27766151143653 40.0 37.0 41.0 34.0 41.0 25 38.095938191647086 40.0 37.0 41.0 34.0 41.0 26 38.12940735256683 40.0 37.0 41.0 34.0 41.0 27 38.1574570122206 40.0 37.0 41.0 34.0 41.0 28 38.092259770744796 40.0 37.0 41.0 34.0 41.0 29 38.031156788561724 40.0 36.0 41.0 34.0 41.0 30 37.88556088631872 40.0 36.0 41.0 34.0 41.0 31 37.87237453436788 40.0 36.0 41.0 34.0 41.0 32 37.74618895774188 40.0 36.0 41.0 33.0 41.0 33 37.665092698927175 40.0 36.0 41.0 33.0 41.0 34 37.566004628631056 40.0 36.0 41.0 33.0 41.0 35 37.46596440501105 40.0 36.0 41.0 33.0 41.0 36 37.36731160480585 40.0 36.0 41.0 33.0 41.0 37 37.32796435448863 40.0 36.0 41.0 33.0 41.0 38 37.22474899100895 40.0 35.0 41.0 33.0 41.0 39 37.18154066180485 40.0 35.0 41.0 33.0 41.0 40 37.10230595989685 40.0 35.0 41.0 32.0 41.0 41 37.00716446796976 39.0 35.0 41.0 32.0 41.0 42 36.90120729155129 39.0 35.0 41.0 32.0 41.0 43 36.78590152402827 39.0 35.0 41.0 31.0 41.0 44 36.82451425606706 39.0 35.0 41.0 32.0 41.0 45 36.81173596982646 39.0 35.0 41.0 32.0 41.0 46 36.74331500923977 39.0 35.0 41.0 32.0 41.0 47 36.69761164969307 39.0 35.0 41.0 32.0 41.0 48 36.659385608493984 39.0 35.0 41.0 32.0 41.0 49 36.618889944677946 39.0 35.0 41.0 31.0 41.0 50 36.53676963524755 39.0 35.0 41.0 31.0 41.0 51 35.69869593858028 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 3.0 10 4.0 11 11.0 12 8.0 13 16.0 14 23.0 15 17.0 16 39.0 17 50.0 18 122.0 19 202.0 20 307.0 21 573.0 22 808.0 23 1196.0 24 1808.0 25 2731.0 26 3779.0 27 4819.0 28 4956.0 29 5452.0 30 6166.0 31 7656.0 32 9771.0 33 13740.0 34 26055.0 35 38615.0 36 36731.0 37 53834.0 38 98738.0 39 196182.0 40 207.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.2279552215894 20.173214178145944 23.779932105638498 12.818898494626163 2 34.44035731010857 23.96239577321651 24.16157070321381 17.435676213461115 3 33.04846460418598 22.88704546823597 26.759394741393216 17.305095186184836 4 29.422120659201006 25.149478356000408 26.2489239695855 19.179477015213077 5 25.085353744391526 29.003950464709117 24.879377719223587 21.03131807167577 6 25.7660462124701 34.00800197426077 24.9093025379744 15.316649275294731 7 76.02827701054947 6.598616851559297 11.737135728484734 5.6359704094064975 8 74.88569302188203 7.353538415500278 11.298562248480927 6.462206314136757 9 68.55037571192892 8.478828190733799 14.532774477627312 8.438021619709962 10 35.96030492224405 25.53830668275611 21.944607994590214 16.55678040040962 11 28.970916573880295 24.547872908906132 25.40597680243596 21.075233714777614 12 25.940542882848224 21.218251030365916 31.86915470159709 20.97205138518877 13 24.224140778783692 24.204514761291275 31.691937593150715 19.879406866774318 14 20.509965547595037 27.290074481707972 29.828631833400372 22.371328137296622 15 19.70763063446445 25.04338127133844 34.17161689236587 21.077371201831244 16 21.67314713877926 23.689963332381183 32.08581816203318 22.55107136680638 17 21.821022379489452 24.059165641644466 28.825567454233486 25.294244524632596 18 21.817718990406572 24.345200272821074 30.759410286753603 23.077670450018754 19 23.416364989516598 25.13976250575664 28.908540815315288 22.53533168941147 20 24.42389865979562 24.871022088013945 29.549009663384652 21.15606958880579 21 23.70434279074196 25.76371440841159 29.495766804048788 21.036175996797656 22 21.615434988331263 24.623462223802665 27.65228137879574 26.10882140907033 23 21.367486490110235 25.940931516857972 29.03445823447456 23.657123758557237 24 22.368219065218618 24.46023593970732 29.49052024491715 23.68102475015691 25 21.072901910719107 26.83459542228 27.887599271699866 24.204903395301024 26 20.455362469225044 27.024637453048157 28.215995009939316 24.304005067787486 27 22.765014389174212 25.3432124098612 29.447964820849435 22.44380838011515 28 20.88130534391195 25.584165495906714 30.056177046109482 23.478352114071853 29 21.473583574772213 25.306292178934868 28.881142117627856 24.338982128665062 30 22.13931363347538 25.23420057012609 29.112767987439348 23.513717808959182 31 23.856298688554535 26.085309051480404 26.423809273973376 23.63458298599169 32 22.695643218433688 26.751622061198198 26.454705677748564 24.098029042619547 33 22.546602075694246 24.352972953016092 27.707661725185233 25.392763246104426 34 21.96870330319477 24.42117822172736 28.54497369919339 25.065144775884484 35 22.236472135913086 23.469996482862214 28.099016173004316 26.194515208220388 36 23.28869871731345 25.21690635669218 28.53195445986674 22.96244046612763 37 22.334019272360546 25.25499248964776 29.898780272160398 22.512207965831298 38 22.259012908478635 25.494585356659144 27.03746237536993 25.208939359492287 39 22.06819360969098 23.31065653886437 29.459235207132213 25.16191464431244 40 22.96302341714226 23.232735419909332 30.688095945964328 23.116145216984084 41 21.172975168229947 24.210927222452163 29.712041630475124 24.904055978842766 42 22.08160148302738 24.942336428803223 29.83038068644425 23.145681401725145 43 22.96963019530802 23.31454287896188 29.365768727787138 24.35005819794296 44 22.095786624383287 23.42938422884325 28.808273240799576 25.666555905973887 45 22.13076368526086 22.920273676069666 27.996028160420344 26.952934478249123 46 23.094576029442912 24.260089424685642 28.465303727194467 24.180030818676972 47 21.12400728300134 23.63866364309407 31.596139309747134 23.641189764157453 48 21.233602073751076 23.356709669019846 29.90383251428716 25.505855742941918 49 21.75417732981231 22.39134278879879 32.066192144540764 23.78828773684814 50 21.031123754670894 22.09345482032478 30.790695324538547 26.084726100465776 51 21.03947938588054 22.43933908900302 28.390880314327188 28.130301210789256 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 286.0 1 576.5 2 867.0 3 3028.5 4 5190.0 5 3392.0 6 1594.0 7 1623.0 8 1652.0 9 1642.0 10 1632.0 11 1663.5 12 1695.0 13 1644.0 14 1593.0 15 1603.0 16 1613.0 17 1588.0 18 1563.0 19 1485.0 20 1407.0 21 1515.5 22 1624.0 23 1831.5 24 2039.0 25 2455.0 26 3699.5 27 4528.0 28 5241.5 29 5955.0 30 6172.5 31 6390.0 32 7697.5 33 9005.0 34 10575.5 35 12146.0 36 12575.5 37 13005.0 38 13938.0 39 14871.0 40 17421.5 41 19972.0 42 22626.0 43 25280.0 44 29003.0 45 32726.0 46 38776.0 47 44826.0 48 49180.5 49 53535.0 50 53174.0 51 52813.0 52 45269.0 53 37725.0 54 33532.5 55 29340.0 56 26834.5 57 24329.0 58 23269.0 59 22209.0 60 20840.0 61 19471.0 62 17863.5 63 16256.0 64 14550.0 65 12844.0 66 10922.5 67 9001.0 68 8348.5 69 7696.0 70 6504.5 71 5313.0 72 4751.5 73 4190.0 74 3188.0 75 1879.5 76 1573.0 77 1212.0 78 851.0 79 697.5 80 544.0 81 436.0 82 328.0 83 197.0 84 66.0 85 38.5 86 11.0 87 9.0 88 7.0 89 4.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 514623.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.486206648734132 #Duplication Level Percentage of deduplicated Percentage of total 1 72.50129556109115 22.827907743374666 2 10.323126119955687 6.500721645477395 3 3.8005342024774516 3.58993215824361 4 1.9359676143154383 2.438251054783709 5 1.1886316207627068 1.8712750420277184 6 0.8922349642603103 1.6855856678355625 7 0.7534862146204809 1.660709586235903 8 0.6429043036562949 1.61940942082261 9 0.5425891014900307 1.5375665317379474 >10 7.2357328543017605 47.405431520711424 >50 0.11344605432963739 2.44398008636302 >100 0.0619923794151024 3.533728574675834 >500 0.005579314147359216 1.271666022095286 >1k 0.0024796951766040956 1.6138349456153223 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3387 0.658151695513026 No Hit GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 2582 0.5017265065883181 No Hit CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 1168 0.22696226169448314 No Hit CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT 1131 0.21977253251409282 Illumina Single End Adapter 2 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 830 0.16128311404659332 No Hit TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 828 0.1608944800368425 No Hit GTGAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC 807 0.1568138229344588 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCC 798 0.1550649698905801 No Hit GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 780 0.15156726380282265 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG 764 0.14845819172481603 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC 589 0.11445271587161865 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 560 0.10881752273023165 No Hit CAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGA 559 0.10862320572535622 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.22715657869935857 0.0 2 0.0 0.0 0.0 1.2352731999930047 0.0 3 0.0 0.0 0.0 1.6643251467579179 0.0 4 0.0 0.0 0.0 2.2878884154031205 0.0 5 0.0 0.0 0.0 4.002347349418895 0.0 6 0.0 0.0 0.0 4.900091911943306 0.0 7 0.0 0.0 0.0 5.889942734778663 0.0 8 0.0 0.0 0.0 7.2942717290132775 0.0 9 0.0 0.0 0.0 7.858179677161728 0.0 10 0.0 0.0 0.0 9.210626031094607 0.0 11 0.0 0.0 0.0 10.773712018312434 0.0 12 0.0 0.0 0.0 12.212046488400246 0.0 13 0.0 0.0 0.0 12.707943484842302 0.0 14 0.0 0.0 0.0 12.943844328761054 0.0 15 0.0 0.0 0.0 13.368426984413833 0.0 16 0.0 0.0 0.0 14.200881033300105 0.0 17 0.0 0.0 0.0 15.140598068877605 0.0 18 0.0 0.0 0.0 16.230716466228674 0.0 19 0.0 0.0 0.0 16.831156011293704 0.0 20 0.0 0.0 0.0 17.382627671130127 0.0 21 0.0 0.0 0.0 18.068566698340337 0.0 22 0.0 0.0 0.0 18.77821240014535 0.0 23 0.0 0.0 0.0 19.45890486822392 0.0 24 0.0 0.0 0.0 20.028836643523512 0.0 25 0.0 0.0 0.0 20.54163921938973 0.0 26 0.0 0.0 0.0 21.02451697650513 0.0 27 0.0 0.0 0.0 21.506034514586407 0.0 28 0.0 0.0 0.0 21.990272490735936 0.0 29 0.0 0.0 0.0 22.479174075002476 0.0 30 0.0 0.0 0.0 23.00072091608809 0.0 31 0.0 0.0 0.0 23.496617912530144 0.0 32 0.0 0.0 0.0 23.986879715830813 0.0 33 0.0 0.0 0.0 24.448188285405045 0.0 34 0.0 0.0 0.0 24.923487679330307 0.0 35 0.0 0.0 0.0 25.43473571915752 0.0 36 1.9431700487541366E-4 0.0 0.0 25.89779314177563 0.0 37 1.9431700487541366E-4 0.0 0.0 26.36551417251075 0.0 38 1.9431700487541366E-4 0.0 0.0 26.811471698699826 0.0 39 1.9431700487541366E-4 0.0 0.0 27.250628129718258 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCGCG 25 3.8877915E-5 45.000004 1 CAACGCT 20 7.029651E-4 45.0 24 GACGTAT 20 7.029651E-4 45.0 9 TAGCGAT 20 7.029651E-4 45.0 1 ACTAGTC 20 7.029651E-4 45.0 43 GTTAACG 35 1.2101737E-7 45.0 1 CGGTCTA 45 3.8380676E-10 45.0 31 TTCGCAC 20 7.029651E-4 45.0 11 TAGTACG 20 7.029651E-4 45.0 1 GTACGAG 45 3.8380676E-10 45.0 1 AAATGCG 20 7.029651E-4 45.0 1 TCATCGA 30 2.1631568E-6 44.999996 16 TATAGCG 30 2.1631568E-6 44.999996 1 TCGACAA 30 2.1631568E-6 44.999996 19 CACAACG 70 0.0 41.785713 12 CGTGTAC 65 0.0 41.538464 18 CGAATAT 165 0.0 40.90909 14 GACCTAT 155 0.0 40.645164 33 CGTTTTT 1600 0.0 40.35938 1 TCGGCGT 140 0.0 40.17857 4 >>END_MODULE