##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551477_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 394977 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08655440696547 33.0 31.0 34.0 30.0 34.0 2 32.17395696458275 33.0 31.0 34.0 30.0 34.0 3 32.20069523035519 34.0 31.0 34.0 30.0 34.0 4 35.81435627897321 37.0 35.0 37.0 35.0 37.0 5 35.843411135331934 37.0 35.0 37.0 35.0 37.0 6 35.80827491221008 37.0 35.0 37.0 35.0 37.0 7 35.977413874731944 37.0 35.0 37.0 35.0 37.0 8 35.65052142276639 37.0 35.0 37.0 33.0 37.0 9 37.59623218567157 39.0 37.0 39.0 35.0 39.0 10 37.349384900892964 39.0 37.0 39.0 34.0 39.0 11 37.37227484131987 39.0 37.0 39.0 34.0 39.0 12 37.28940925674153 39.0 37.0 39.0 34.0 39.0 13 37.195700002784974 39.0 37.0 39.0 34.0 39.0 14 38.440886431361825 40.0 38.0 41.0 34.0 41.0 15 38.36677578694456 40.0 38.0 41.0 34.0 41.0 16 38.51378941052264 40.0 38.0 41.0 34.0 41.0 17 38.35989437359644 40.0 38.0 41.0 34.0 41.0 18 38.292923385412315 40.0 38.0 41.0 34.0 41.0 19 38.23522382315932 40.0 37.0 41.0 34.0 41.0 20 37.95268838438694 40.0 36.0 41.0 33.0 41.0 21 38.03487291665084 40.0 36.0 41.0 34.0 41.0 22 37.99767328224175 40.0 36.0 41.0 34.0 41.0 23 37.899325783526635 40.0 36.0 41.0 33.0 41.0 24 37.88536800877013 40.0 36.0 41.0 33.0 41.0 25 37.82010851264757 40.0 36.0 41.0 33.0 41.0 26 37.78788891505075 40.0 36.0 41.0 33.0 41.0 27 37.70823617577732 40.0 36.0 41.0 33.0 41.0 28 37.588236783407645 40.0 36.0 41.0 33.0 41.0 29 37.51133863490786 40.0 36.0 41.0 33.0 41.0 30 37.41420892862116 40.0 36.0 41.0 33.0 41.0 31 37.33115345956853 40.0 36.0 41.0 32.0 41.0 32 37.06790015621163 40.0 35.0 41.0 32.0 41.0 33 36.881775394516644 39.0 35.0 41.0 31.0 41.0 34 36.66360826073417 39.0 35.0 41.0 30.0 41.0 35 36.6718441833322 40.0 35.0 41.0 30.0 41.0 36 36.59274337493069 39.0 35.0 41.0 30.0 41.0 37 36.510989247475166 39.0 35.0 41.0 30.0 41.0 38 36.46383713482051 39.0 35.0 41.0 30.0 41.0 39 36.40831238274634 39.0 35.0 41.0 30.0 41.0 40 36.38451859222182 39.0 35.0 41.0 30.0 41.0 41 36.19475564399952 39.0 35.0 41.0 29.0 41.0 42 36.16988330966107 39.0 35.0 41.0 29.0 41.0 43 36.04326834220727 39.0 35.0 41.0 29.0 41.0 44 36.16167017319996 39.0 35.0 41.0 30.0 41.0 45 36.15285193821413 39.0 35.0 41.0 30.0 41.0 46 36.0773462758591 39.0 35.0 41.0 30.0 41.0 47 35.906265428113535 39.0 35.0 41.0 29.0 41.0 48 35.93472024953352 39.0 35.0 41.0 29.0 41.0 49 36.00333690316145 39.0 35.0 41.0 29.0 41.0 50 35.870607655635645 39.0 35.0 41.0 29.0 41.0 51 35.07489803203731 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 3.0 11 6.0 12 5.0 13 8.0 14 9.0 15 16.0 16 21.0 17 48.0 18 86.0 19 236.0 20 540.0 21 1047.0 22 1659.0 23 2269.0 24 2881.0 25 3580.0 26 4378.0 27 4636.0 28 4603.0 29 4702.0 30 5447.0 31 7181.0 32 9195.0 33 12128.0 34 20210.0 35 29180.0 36 28636.0 37 41774.0 38 76205.0 39 134131.0 40 151.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 49.19678867377088 17.340756550381414 19.915590021697465 13.546864754150242 2 30.135172427761614 33.708798233821206 20.236115014291972 15.919914324125203 3 27.79959339404573 32.73608336687959 24.75663139879031 14.70769184028437 4 25.319702159872598 21.154649511237363 36.92974527630723 16.59590305258281 5 31.801851753393233 24.20368780966993 24.058869250614592 19.93559118632224 6 21.5177086260719 39.310137045954576 25.39768138397932 13.774472943994207 7 66.79756036427437 5.836289201649716 22.11040136514278 5.255749068933127 8 63.92954526466098 14.915552044802608 14.208422262562124 6.946480427974287 9 59.45839884347697 6.9849636814295515 14.914539327606418 18.64209814748707 10 37.972084450486996 21.185537385721194 23.591753443871415 17.250624719920403 11 30.90888836565167 21.463021897477574 26.346344217511398 21.281745519359355 12 24.333062431483352 18.005605389680916 32.377328300128866 25.284003878706862 13 24.11355597920892 20.9323580866734 36.96265858518344 17.99142734893424 14 19.463918152196204 29.591343293406958 28.420389035310915 22.52434951908592 15 16.586029059919944 22.67929525010317 38.94935654481147 21.785319145165417 16 17.782048068621716 24.29179420573856 29.279426396980078 28.64673132865964 17 18.12029561214957 25.65288611741949 31.646399663777892 24.580418606653044 18 18.744888942900474 23.721887603581983 32.133516635145845 25.399706818371705 19 19.62949741377346 25.42046752089362 28.619894322960576 26.330140742372343 20 22.963362423634795 24.551556166561596 33.47941778888391 19.005663620919698 21 20.996665628631543 30.31948695746841 29.11764482488854 19.56620258901151 22 18.54563683454986 22.47624545226684 31.618296761583586 27.359820951599712 23 20.55182960020457 28.030492914777316 29.57362074247361 21.844056742544502 24 22.137238370841846 23.933292318286888 27.831493985725754 26.097975325145516 25 18.03396147117427 32.56746595371376 26.065821554166448 23.332751020945526 26 18.56867615076321 24.61231919833307 31.098266481339422 25.720738169564306 27 25.525030571400357 24.803722748413197 26.522303830349614 23.148942849836825 28 17.57317514690729 25.702002901434767 33.24877144745137 23.476050504206576 29 21.941530772677904 24.57054461399018 28.023150715104926 25.464773898226984 30 23.161348635490167 27.45678862313502 27.621861526114177 21.760001215260637 31 21.80734574418257 25.19083389665727 26.1911453071951 26.81067505196505 32 23.931266883894505 26.874982593923193 23.020834124518643 26.17291639766366 33 21.265795223519344 22.49852523058305 23.77733387007345 32.45834567582416 34 19.75254255311069 28.87737767009218 25.262483638287797 26.107596138509333 35 22.693979649447943 22.713980814072716 23.439592685143694 31.152446851335647 36 20.041166954025172 28.248480291257465 25.57338781751849 26.136964937198876 37 21.111102671801145 23.836324646751585 28.56090354628244 26.49166913516483 38 18.401577813391665 23.23679606660641 25.64427802125187 32.71734809875005 39 21.43947622266613 25.66833005466141 24.843978256961798 28.048215465710662 40 19.851282479739325 22.082298462948476 27.319818622350162 30.746600434962033 41 18.194223967471522 27.1722150910053 23.876326976001135 30.75723396552204 42 19.851535659038376 21.616954911298635 29.960225532119594 28.571283897543402 43 22.17470890710092 21.840259053058787 25.755930092131944 30.229101947708347 44 21.96684870258268 21.338710861645108 28.958648225086524 27.735792210685684 45 20.227253738825297 20.274598267747233 28.140625909863104 31.35752208356436 46 25.586553141068975 24.783468404489376 25.194378406843942 24.43560004759771 47 17.490638695417708 23.064380963954864 34.900766373738215 24.54421396688921 48 20.820959195092374 23.963927013471668 26.813966382852673 28.401147408583284 49 20.07889066958329 19.478096192942882 34.010081599688085 26.43293153778574 50 20.671583408654175 19.966225881507025 30.023773536180588 29.338417173658215 51 20.463470024836887 20.024457120288016 26.6731986925821 32.838874162292996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 165.0 1 403.5 2 642.0 3 2991.5 4 5341.0 5 3429.0 6 1517.0 7 1455.5 8 1394.0 9 1352.0 10 1310.0 11 1379.5 12 1449.0 13 1391.0 14 1333.0 15 1277.5 16 1222.0 17 1178.5 18 1135.0 19 1157.5 20 1180.0 21 1221.5 22 1263.0 23 1352.0 24 1441.0 25 1806.0 26 2343.0 27 2515.0 28 2937.0 29 3359.0 30 4093.5 31 4828.0 32 4970.5 33 5113.0 34 5907.0 35 6701.0 36 7312.0 37 7923.0 38 8513.5 39 9104.0 40 10307.5 41 11511.0 42 13231.5 43 14952.0 44 16669.0 45 18386.0 46 20704.0 47 23022.0 48 45679.0 49 68336.0 50 55417.5 51 42499.0 52 41855.0 53 41211.0 54 33966.0 55 26721.0 56 23696.0 57 20671.0 58 18523.5 59 16376.0 60 14948.5 61 13521.0 62 12169.5 63 10818.0 64 9394.5 65 7971.0 66 6689.5 67 5408.0 68 4944.5 69 4481.0 70 3648.5 71 2816.0 72 2452.5 73 2089.0 74 1694.5 75 1067.0 76 834.0 77 699.5 78 565.0 79 403.0 80 241.0 81 168.5 82 96.0 83 61.0 84 26.0 85 21.0 86 16.0 87 9.0 88 2.0 89 1.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 394977.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.74228485817414 #Duplication Level Percentage of deduplicated Percentage of total 1 73.36966036351313 25.490296402966617 2 9.59876919120286 6.6696634705727105 3 3.617763108328719 3.770680693768496 4 2.1116378896388 2.934525003165795 5 1.4824115632440766 2.575118240363847 6 1.2106280384003583 2.5235990500438694 7 1.0481133888648293 2.5489697743725706 8 0.9173775529176451 2.5497433812767643 9 0.8096412977669769 2.531590973996589 >10 5.71614700753752 31.198401577584395 >50 0.06075527753142829 1.4462638194160617 >100 0.04611545162024075 3.0405363504375655 >500 0.002195973886678131 0.4842071939806896 >1k 0.006587921660034393 4.750520159432395 >5k 0.001463982591118754 4.737804634380382 >10k+ 7.31991295559377E-4 2.7480792742412454 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCG 10806 2.735855505510447 No Hit GAATCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTC 9470 2.3976079619825965 RNA PCR Primer, Index 16 (95% over 22bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGC 9160 2.3191223792777804 No Hit GCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 3678 0.9311934618977814 Illumina PCR Primer Index 7 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3536 0.8952420014329948 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCT 2289 0.5795274155203974 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCCACCT 1923 0.4868637920689053 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTA 1612 0.40812503006504175 No Hit GAACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCT 1508 0.3817943829640713 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTC 1384 0.350400149882145 No Hit CCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 1382 0.3498937912840494 RNA PCR Primer, Index 16 (96% over 25bp) CTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGCT 1368 0.34634928109738033 RNA PCR Primer, Index 16 (96% over 26bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCC 735 0.1860867848001276 No Hit TCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 635 0.16076885489534834 Illumina PCR Primer Index 7 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTT 534 0.13519774569152126 RNA PCR Primer, Index 16 (95% over 21bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATG 489 0.12380467723437062 No Hit ACTGTCTCTTATACACATCTGACGCAGTCCACCTCGTATGCCGTCTTCTGC 423 0.10709484349721629 Illumina PCR Primer Index 7 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3549573772650053 0.0 2 0.0 0.0 0.0 1.957329160938485 0.0 3 0.0 0.0 0.0 2.4745744688931253 0.0 4 0.0 0.0 0.0 3.445770260040458 0.0 5 0.0 0.0 0.0 7.395620504485072 0.0 6 0.0 0.0 0.0 8.369348088622882 0.0 7 0.0 0.0 0.0 9.844117505576275 0.0 8 0.0 0.0 0.0 11.48598525990121 0.0 9 0.0 0.0 0.0 12.039688386918732 0.0 10 0.0 0.0 0.0 15.94776404702046 0.0 11 0.0 0.0 0.0 17.681282707600694 0.0 12 0.0 0.0 0.0 21.470870455748056 0.0 13 0.0 0.0 0.0 22.176481162194253 0.0 14 0.0 0.0 0.0 22.51624778151639 0.0 15 0.0 0.0 0.0 23.35376490276649 0.0 16 0.0 0.0 0.0 24.21482769882803 0.0 17 0.0 0.0 0.0 25.211594599179193 0.0 18 0.0 0.0 0.0 26.219754567987504 0.0 19 0.0 0.0 0.0 27.35095967613304 0.0 20 0.0 0.0 0.0 28.022644356506834 0.0 21 0.0 0.0 0.0 28.70597528463683 0.0 22 0.0 0.0 0.0 29.406269225803022 0.0 23 0.0 0.0 0.0 30.083017492157772 0.0 24 0.0 0.0 0.0 30.61520037875623 0.0 25 0.0 0.0 0.0 31.10383642591847 0.0 26 0.0 0.0 0.0 31.571711770558792 0.0 27 0.0 0.0 0.0 32.09680563678391 0.0 28 0.0 0.0 0.0 32.54467981679946 0.0 29 0.0 0.0 0.0 32.97685688027404 0.0 30 0.0 0.0 0.0 33.467012003230565 0.0 31 0.0 0.0 0.0 33.91716479693754 0.0 32 0.0 0.0 0.0 34.373393893821664 0.0 33 0.0 0.0 0.0 34.796456502530525 0.0 34 0.0 0.0 0.0 35.20888558067938 0.0 35 0.0 0.0 0.0 35.67473549092732 0.0 36 0.0 0.0 0.0 36.10134260982285 0.0 37 0.0 0.0 0.0 36.51959481184981 0.0 38 0.0 0.0 0.0 36.91860538714913 0.0 39 0.0 0.0 0.0 37.323439086326545 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCGG 35 1.2092278E-7 45.000004 2 CGAACCC 45 3.8380676E-10 45.0 34 CATGCGG 40 6.7957444E-9 45.0 2 TTTCGGC 25 3.88614E-5 45.0 13 TTATGCG 20 7.027657E-4 45.0 1 GCCATGC 20 7.027657E-4 45.0 27 GCTCTAC 20 7.027657E-4 45.0 22 CTACGGA 25 3.88614E-5 45.0 35 CGCTACG 25 3.88614E-5 45.0 33 CGGGCTA 20 7.027657E-4 45.0 6 TCATGCG 20 7.027657E-4 45.0 1 AACGAGC 55 1.8189894E-12 45.0 15 CTACCTT 20 7.027657E-4 45.0 17 ATACGGT 20 7.027657E-4 45.0 6 GACGAAT 20 7.027657E-4 45.0 20 TCGACAG 20 7.027657E-4 45.0 1 ATCGCCA 25 3.88614E-5 45.0 24 TGGTCGC 20 7.027657E-4 45.0 44 TGCGTAG 25 3.88614E-5 45.0 1 CATCGTT 30 2.1618707E-6 44.999996 36 >>END_MODULE