SRR3551476_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551476_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382327
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	3590	0.9389867835648541	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	3372	0.881967530412448	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2991	0.7823146154992976	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	2778	0.7266031433824972	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	2447	0.6400280388254034	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1395	0.36487090893397534	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	1161	0.30366675646763114	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCC	802	0.2097680781111457	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCT	799	0.2089834094897823	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCGGGTGAT	737	0.19276692464827228	No Hit
GAACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT	591	0.15457971840858742	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTA	550	0.14385591391662111	No Hit
TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	523	0.13679389632435063	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTC	486	0.12711631666086884	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	466	0.12188519251844625	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	395	0.10331470181284606	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG	389	0.1017453645701193	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACAGG	60	0.0	45.000004	2
ATAACGG	30	2.161687E-6	45.000004	2
TCGTTTA	20	7.027374E-4	45.0	38
TAGCGCG	25	3.885905E-5	45.0	1
CGTTCAT	35	1.2090823E-7	45.0	17
GCGATAT	25	3.885905E-5	45.0	9
ATGGTCG	20	7.027374E-4	45.0	44
CATCGTT	20	7.027374E-4	45.0	36
TATAACG	25	3.885905E-5	45.0	1
AATCGCG	20	7.027374E-4	45.0	12
CTACGAA	65	0.0	41.53846	11
TACGAAT	65	0.0	41.53846	12
CGAATAT	65	0.0	41.53846	14
GCTACGA	65	0.0	41.53846	10
TGACTAT	65	0.0	41.53846	23
TACGGCT	385	0.0	41.493507	7
CGTTTTT	1525	0.0	39.983604	1
CCATTAC	40	3.45015E-7	39.375	6
ACGGCTG	410	0.0	38.963413	8
TTTACGG	35	6.2373565E-6	38.571426	2