SRR3551475_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551475_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367027
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1852	0.5045950297934485	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	1358	0.37000002724595193	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCG	1124	0.3062444997234536	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGC	964	0.26265097663114706	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTC	951	0.25910900287989713	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCC	826	0.22505156296403261	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	637	0.1735567138112455	No Hit
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGC	632	0.17219441621461093	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	454	0.12369662177441987	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	374	0.1018998602282666	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	20	7.0270046E-4	45.0	1
CGGCGAA	20	7.0270046E-4	45.0	31
CGATTGT	25	3.8855993E-5	45.0	10
CAATTAG	25	3.8855993E-5	45.0	44
CGATTAT	20	7.0270046E-4	45.0	10
TTAAGCG	20	7.0270046E-4	45.0	1
GCGATAA	20	7.0270046E-4	45.0	9
GGTGATC	40	6.7939254E-9	45.0	8
CGATGAC	20	7.0270046E-4	45.0	10
CGAAGCT	20	7.0270046E-4	45.0	42
GTTAAGG	85	0.0	42.35294	2
GTAAGCG	85	0.0	42.35294	1
AGTACGG	70	0.0	41.785717	2
ACGTAGG	50	1.0768417E-9	40.5	2
GATGAAT	95	0.0	40.263157	20
CGTGCGG	45	1.9221261E-8	40.000004	2
TACGGGT	40	3.4496406E-7	39.375	4
ACGTGCG	35	6.2366707E-6	38.57143	1
CGTTTTT	870	0.0	38.53448	1
TACGAAT	65	9.094947E-12	38.076927	12