SRR3551474_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551474_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	271352
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1415	0.5214628969014418	No Hit
GCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	914	0.3368318641469383	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCC	705	0.25981013591202573	No Hit
CCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	619	0.22811698458091337	No Hit
CTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGCT	609	0.22443173442613287	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGTACTCGGTCGTATGCCGTCTTCTGC	371	0.13672278074235678	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	291	0.10724077950411273	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	289	0.10650372947315664	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	284	0.1046611043957664	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	276	0.10171290427194199	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	20	7.023752E-4	45.0	20
CGTTGAT	55	1.8189894E-12	45.0	25
GGATATA	25	3.8829046E-5	45.0	8
TCGATGG	25	3.8829046E-5	45.0	2
GCCGCAA	20	7.023752E-4	45.0	45
ATATCAG	25	3.8829046E-5	45.0	1
AATTGCG	20	7.023752E-4	45.0	1
CGAATAT	40	6.7811925E-9	45.0	14
GCTACGA	40	6.7811925E-9	45.0	10
GTAACGG	20	7.023752E-4	45.0	2
ATCGCAT	25	3.8829046E-5	45.0	10
GCGTACG	20	7.023752E-4	45.0	1
TCGAAAG	20	7.023752E-4	45.0	1
AATGTCG	25	3.8829046E-5	45.0	1
TCGTTGA	65	0.0	41.538464	24
TGCATGG	65	0.0	41.538464	2
TAATCGT	65	0.0	41.538464	21
CACGGGC	50	1.0750227E-9	40.5	4
CGTTTTT	775	0.0	40.354836	1
CTATGCT	45	1.9190338E-8	40.0	36