SRR3551472_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551472_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	447721
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	5436	1.2141489901076785	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	4842	1.081477080592601	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	4797	1.0714261783566106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3637	0.812336254051072	No Hit
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	2556	0.5708912470042727	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCT	1231	0.27494801450010165	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	950	0.21218571387091514	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	927	0.20704858606140877	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	904	0.2019114582519024	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCT	843	0.18828690188755942	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTA	808	0.18046953348178887	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTC	770	0.1719821049269523	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTGAGGTT	739	0.1650581500532698	No Hit
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	616	0.13758568394156181	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	554	0.12373777419419683	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	25	3.8869766E-5	45.000004	6
TGTGACG	25	3.8869766E-5	45.000004	1
CCCGTAA	25	3.8869766E-5	45.000004	21
TTGCGAG	30	2.162522E-6	45.000004	1
CGAATGC	30	2.162522E-6	45.000004	45
CGTAAGG	35	1.2097007E-7	45.000004	2
TATAGCG	25	3.8869766E-5	45.000004	1
CGATCGA	30	2.162522E-6	45.000004	41
CGATCAT	25	3.8869766E-5	45.000004	10
TAATGCG	35	1.2097007E-7	45.000004	1
TGATCGG	20	7.028669E-4	45.0	2
AATCCTC	20	7.028669E-4	45.0	12
AATCCGG	20	7.028669E-4	45.0	2
TAACGAG	20	7.028669E-4	45.0	1
GCCGATT	20	7.028669E-4	45.0	9
CCGTAGG	20	7.028669E-4	45.0	2
ACGTAGG	20	7.028669E-4	45.0	2
GCGTCCC	55	1.8189894E-12	45.0	7
AATGCGG	70	0.0	41.785717	2
GCTACGA	140	0.0	41.785717	10