SRR3551469_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551469_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	562861
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3691	0.6557569275540498	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2104	0.3738045449942348	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	1626	0.2888812690877499	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG	1488	0.2643636706042877	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1117	0.19845041671034233	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	1093	0.19418648653930545	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC	1047	0.18601395371148471	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	927	0.16469430285630024	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	780	0.13857773055869924	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	636	0.11299414953247781	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGTCA	25	3.8882594E-5	45.000004	27
GGCGTAT	35	1.2104465E-7	45.0	6
GCGTATT	35	1.2104465E-7	45.0	7
TAGACGG	60	0.0	44.999996	2
TATTGCG	30	2.1635205E-6	44.999996	1
CGTTAGG	80	0.0	42.1875	2
CGTTTTT	1755	0.0	41.153847	1
GGCTACG	50	1.0786607E-9	40.500004	1
ATGGGCG	135	0.0	40.0	5
TCGGCGT	80	0.0	39.375	4
ACGTTAG	35	6.2426097E-6	38.571426	1
CGTGTTA	35	6.2426097E-6	38.571426	37
ATTAGTC	65	9.094947E-12	38.07692	31
GCTACGA	95	0.0	37.894737	10
ATTAGCG	30	1.13918206E-4	37.499996	1
TAAACGG	30	1.13918206E-4	37.499996	2
CCGTAGG	30	1.13918206E-4	37.499996	1
ACGCTAG	30	1.13918206E-4	37.499996	1
CGATGTC	30	1.13918206E-4	37.499996	10
CATATCA	85	0.0	37.058823	29