SRR3551468_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551468_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591964
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18233	3.0800859511727063	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC	1593	0.26910420228257126	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	1577	0.26640133521633075	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCG	1181	0.19950537532687798	No Hit
GCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGC	1069	0.18058530586319438	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTT	938	0.15845558175835017	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGC	875	0.14781304268502815	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTC	748	0.12635903534674406	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCG	722	0.12196687636410322	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCT	660	0.11149326648242124	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGC	644	0.10879039941618072	No Hit
CGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTG	614	0.10372252366697973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTAACG	25	3.8885046E-5	45.000004	1
ATAGACG	20	7.030511E-4	45.0	1
GCCGCTA	20	7.030511E-4	45.0	44
TACGTGC	20	7.030511E-4	45.0	37
CTAACGG	30	2.1637115E-6	44.999996	2
CGTTTTT	7515	0.0	44.101795	1
CCCCGAT	100	0.0	42.750004	40
CCCTCGT	55	6.002665E-11	40.909092	14
TGCAATC	105	0.0	40.714287	34
TTTAGCG	50	1.0804797E-9	40.500004	1
TCGTTCG	50	1.0804797E-9	40.500004	45
TGTTGCG	50	1.0804797E-9	40.500004	1
GTTATAG	50	1.0804797E-9	40.500004	1
TCGTTCA	95	0.0	40.263157	16
GCGTAAG	45	1.9255822E-8	40.0	1
CGTAAGG	80	0.0	39.375	2
TACCGGT	40	3.4544246E-7	39.375	40
TAACCCG	35	6.2431573E-6	38.571426	37
CCGACGG	35	6.2431573E-6	38.571426	2
TGATGCG	35	6.2431573E-6	38.571426	1