SRR3551467_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551467_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	416649
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4603	1.1047668421141057	No Hit
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	3581	0.8594764418011323	Illumina PCR Primer Index 2 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	1948	0.46753982368852437	Illumina PCR Primer Index 2 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCT	1926	0.46225959980703185	Illumina PCR Primer Index 2 (96% over 25bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCC	1720	0.41281750346214674	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	1624	0.38977652652472466	Illumina PCR Primer Index 2 (95% over 24bp)
ACTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	972	0.23328989149139923	Illumina PCR Primer Index 2 (95% over 24bp)
AGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	573	0.13752583109523844	Illumina PCR Primer Index 2 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGC	559	0.1341656886251977	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	537	0.12888546474370513	Illumina PCR Primer Index 2 (95% over 23bp)
ACCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	479	0.11496487451067926	Illumina PCR Primer Index 2 (95% over 23bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCG	468	0.11232476256993296	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG	434	0.10416441657126262	Illumina PCR Primer Index 2 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGG	20	7.0281036E-4	45.0	2
TTTACGG	25	3.8865095E-5	45.0	2
GACACGA	20	7.0281036E-4	45.0	25
GCGCATT	20	7.0281036E-4	45.0	11
ACGGGTT	20	7.0281036E-4	45.0	21
CCGTCAG	20	7.0281036E-4	45.0	30
GCCGACG	25	3.8865095E-5	45.0	1
CCCCGAT	25	3.8865095E-5	45.0	14
CTACGCG	20	7.0281036E-4	45.0	1
AGCGCGT	20	7.0281036E-4	45.0	22
CTCGCGG	25	3.8865095E-5	45.0	2
GCTAGCG	25	3.8865095E-5	45.0	1
TTCGGGC	25	3.8865095E-5	45.0	4
TAAGGGT	35	1.2094279E-7	45.0	4
CGAGAGT	25	3.8865095E-5	45.0	28
CGGTCTA	25	3.8865095E-5	45.0	31
CGTCCTT	25	3.8865095E-5	45.0	26
TCGAAGG	70	0.0	45.0	2
TAGTAAG	20	7.0281036E-4	45.0	1
GCATACT	20	7.0281036E-4	45.0	28