SRR3551466_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551466_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	488846
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2941	0.601620960384252	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	944	0.19310784991592445	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	905	0.18512987730287248	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC	770	0.15751381825769262	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC	638	0.13051144941351672	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	576	0.11782851859276745	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	564	0.11537375778875147	Illumina Single End Adapter 1 (95% over 21bp)
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	534	0.10923685577871149	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	532	0.10882772897804216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCTC	25	3.8875038E-5	45.000004	18
ACGTGCG	25	3.8875038E-5	45.000004	1
CAACGCG	20	7.029304E-4	45.0	1
TCGTAAG	20	7.029304E-4	45.0	1
ATCGGTT	20	7.029304E-4	45.0	34
CGCGTAA	20	7.029304E-4	45.0	31
TCGCGTA	20	7.029304E-4	45.0	30
GCGTAAC	20	7.029304E-4	45.0	32
TCTAGCG	30	2.162933E-6	44.999996	1
GCTACGA	125	0.0	44.999996	10
CGAATAT	140	0.0	43.392857	14
TACGAAT	135	0.0	43.333332	12
CTACGAA	140	0.0	41.785713	11
CATATTA	55	6.002665E-11	40.909092	28
CGTTTTT	1360	0.0	40.53309	1
AAGCTAC	150	0.0	39.0	8
GGATCGC	35	6.2409254E-6	38.571426	8
GACGCAT	35	6.2409254E-6	38.571426	25
CGCGACC	100	0.0	38.250004	10
AGCTACG	150	0.0	37.5	9