Basic Statistics
Measure | Value |
---|---|
Filename | SRR3551466_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 488846 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2941 | 0.601620960384252 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC | 944 | 0.19310784991592445 | No Hit |
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT | 905 | 0.18512987730287248 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC | 770 | 0.15751381825769262 | No Hit |
CCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGC | 638 | 0.13051144941351672 | No Hit |
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 576 | 0.11782851859276745 | No Hit |
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT | 564 | 0.11537375778875147 | Illumina Single End Adapter 1 (95% over 21bp) |
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA | 534 | 0.10923685577871149 | No Hit |
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG | 532 | 0.10882772897804216 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCTC | 25 | 3.8875038E-5 | 45.000004 | 18 |
ACGTGCG | 25 | 3.8875038E-5 | 45.000004 | 1 |
CAACGCG | 20 | 7.029304E-4 | 45.0 | 1 |
TCGTAAG | 20 | 7.029304E-4 | 45.0 | 1 |
ATCGGTT | 20 | 7.029304E-4 | 45.0 | 34 |
CGCGTAA | 20 | 7.029304E-4 | 45.0 | 31 |
TCGCGTA | 20 | 7.029304E-4 | 45.0 | 30 |
GCGTAAC | 20 | 7.029304E-4 | 45.0 | 32 |
TCTAGCG | 30 | 2.162933E-6 | 44.999996 | 1 |
GCTACGA | 125 | 0.0 | 44.999996 | 10 |
CGAATAT | 140 | 0.0 | 43.392857 | 14 |
TACGAAT | 135 | 0.0 | 43.333332 | 12 |
CTACGAA | 140 | 0.0 | 41.785713 | 11 |
CATATTA | 55 | 6.002665E-11 | 40.909092 | 28 |
CGTTTTT | 1360 | 0.0 | 40.53309 | 1 |
AAGCTAC | 150 | 0.0 | 39.0 | 8 |
GGATCGC | 35 | 6.2409254E-6 | 38.571426 | 8 |
GACGCAT | 35 | 6.2409254E-6 | 38.571426 | 25 |
CGCGACC | 100 | 0.0 | 38.250004 | 10 |
AGCTACG | 150 | 0.0 | 37.5 | 9 |