SRR3551464_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551464_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458625
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC	4956	1.0806214227309894	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG	4901	1.0686290542382122	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC	4395	0.9582992641046607	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3519	0.7672935404742436	No Hit
GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	2124	0.46312346688470973	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT	992	0.21629871899700193	No Hit
CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT	942	0.20539656582174978	TruSeq Adapter, Index 22 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAATCCT	902	0.19667484328154808	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCC	883	0.19253202507495232	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT	882	0.19231398201144725	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	881	0.19209593894794222	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC	736	0.1604796947397111	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTA	627	0.13671300081766147	No Hit
TCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC	478	0.1042245843554102	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACCGG	20	7.028847E-4	45.000004	2
AGCGCGC	20	7.028847E-4	45.000004	45
CGCGTAA	40	6.7993824E-9	45.000004	31
TCGCGTA	40	6.7993824E-9	45.000004	30
CGTATGG	35	1.2097917E-7	45.0	2
TTGCGAC	25	3.8871265E-5	45.0	1
GCGTATG	25	3.8871265E-5	45.0	1
CGTTTTT	1725	0.0	41.73913	1
CGCATGG	60	3.6379788E-12	41.249996	2
CTCGAAT	60	3.6379788E-12	41.249996	43
TATGCGG	50	1.0786607E-9	40.5	2
CGTAACT	50	1.0786607E-9	40.5	33
ACACGAC	45	1.9239451E-8	40.0	26
GCCGACC	45	1.9239451E-8	40.0	14
AGTACGG	85	0.0	39.705883	2
TACGGCT	445	0.0	39.4382	7
CTACGAA	40	3.452169E-7	39.375004	11
ATGGGCG	75	0.0	39.0	5
GCCCTAC	75	0.0	39.0	26
TCACGAC	35	6.2400795E-6	38.571426	25