##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551464_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 458625 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.214351594439904 33.0 31.0 34.0 30.0 34.0 2 32.3006094303625 34.0 31.0 34.0 30.0 34.0 3 32.306319978195695 34.0 31.0 34.0 30.0 34.0 4 35.886645952575634 37.0 35.0 37.0 35.0 37.0 5 35.934992641046605 37.0 35.0 37.0 35.0 37.0 6 35.92115780866721 37.0 35.0 37.0 35.0 37.0 7 36.094918506405016 37.0 35.0 37.0 35.0 37.0 8 35.87850858544562 37.0 35.0 37.0 35.0 37.0 9 37.774813845734535 39.0 38.0 39.0 35.0 39.0 10 37.44479912782774 39.0 37.0 39.0 34.0 39.0 11 37.47500245298446 39.0 37.0 39.0 35.0 39.0 12 37.4012319433088 39.0 37.0 39.0 35.0 39.0 13 37.382423548650856 39.0 37.0 39.0 35.0 39.0 14 38.66200490596893 40.0 38.0 41.0 35.0 41.0 15 38.67021422730989 40.0 38.0 41.0 35.0 41.0 16 38.70866176069774 40.0 38.0 41.0 35.0 41.0 17 38.61040283455983 40.0 38.0 41.0 34.0 41.0 18 38.525784682474786 40.0 38.0 41.0 34.0 41.0 19 38.43511583537749 40.0 37.0 41.0 34.0 41.0 20 38.281620059961845 40.0 37.0 41.0 34.0 41.0 21 38.24239629326792 40.0 37.0 41.0 34.0 41.0 22 38.23973180703189 40.0 37.0 41.0 34.0 41.0 23 38.1891196511311 40.0 37.0 41.0 34.0 41.0 24 38.14527773235214 40.0 37.0 41.0 34.0 41.0 25 38.010771327337146 40.0 36.0 41.0 34.0 41.0 26 38.027948759880076 40.0 37.0 41.0 34.0 41.0 27 37.973095666394116 40.0 36.0 41.0 34.0 41.0 28 37.89532624693377 40.0 36.0 41.0 34.0 41.0 29 37.83392968111202 40.0 36.0 41.0 33.0 41.0 30 37.644456800218045 40.0 36.0 41.0 33.0 41.0 31 37.64225892613791 40.0 36.0 41.0 33.0 41.0 32 37.43281984191878 40.0 36.0 41.0 33.0 41.0 33 37.254600163532295 40.0 36.0 41.0 32.0 41.0 34 37.166517307168164 40.0 36.0 41.0 32.0 41.0 35 37.01199890978468 40.0 35.0 41.0 31.0 41.0 36 36.94047206323249 40.0 35.0 41.0 31.0 41.0 37 36.87934805124012 40.0 35.0 41.0 31.0 41.0 38 36.81704442627419 40.0 35.0 41.0 31.0 41.0 39 36.77093485963478 40.0 35.0 41.0 31.0 41.0 40 36.67260397928591 39.0 35.0 41.0 31.0 41.0 41 36.62584246388662 39.0 35.0 41.0 31.0 41.0 42 36.533165440174436 39.0 35.0 41.0 31.0 41.0 43 36.4171076587626 39.0 35.0 41.0 30.0 41.0 44 36.47204796947397 39.0 35.0 41.0 31.0 41.0 45 36.43611665303897 39.0 35.0 41.0 31.0 41.0 46 36.359474516216956 39.0 35.0 41.0 30.0 41.0 47 36.253291905151265 39.0 35.0 41.0 30.0 41.0 48 36.22736222403925 39.0 35.0 41.0 30.0 41.0 49 36.20772308530935 39.0 35.0 41.0 30.0 41.0 50 36.09159334968656 39.0 35.0 41.0 30.0 41.0 51 35.29117688743527 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 3.0 11 8.0 12 4.0 13 15.0 14 21.0 15 12.0 16 26.0 17 61.0 18 121.0 19 233.0 20 452.0 21 903.0 22 1476.0 23 1830.0 24 2460.0 25 3283.0 26 4239.0 27 4876.0 28 5135.0 29 5325.0 30 5932.0 31 7282.0 32 9432.0 33 12804.0 34 23469.0 35 33181.0 36 32009.0 37 47769.0 38 86890.0 39 169164.0 40 206.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.090160806759336 19.188007631507222 21.70902153175252 13.01281002998092 2 33.08411011174707 27.83952030526029 22.219460343417825 16.856909239574815 3 30.861161079313167 27.20610520577814 25.594112837285365 16.33862087762333 4 27.649822840010902 23.683619514854186 30.5125102207686 18.15404742436631 5 27.138293813028074 27.931316434995914 24.878059416734803 20.052330335241212 6 24.013736713000817 36.672662850913056 25.09021531752521 14.223385118560916 7 73.76723902970836 6.24911420005451 14.986753883892067 4.996892886345053 8 72.68879803761243 9.638375579176888 11.890542382120469 5.782284001090216 9 66.92461161079312 7.791550831289179 13.486181520850367 11.797656037067322 10 37.72886345053148 22.959498500953938 22.44884164622513 16.86279640228945 11 31.084001090215317 22.54085581902426 25.343799400381577 21.03134369037885 12 25.249822840010903 20.544453529572092 31.611665303897517 22.594058326519487 13 24.79498500953938 21.796892886345056 33.952357590624146 19.455764513491413 14 21.148214772417553 27.17296266012538 29.729299536658488 21.94952303079858 15 19.553447805941673 24.07435268465522 35.04039247751431 21.331807031888797 16 21.05205778141183 23.319051512673752 30.594930498773508 25.03396020714091 17 21.125320250749525 23.927609702916325 30.80163532297629 24.145434723357866 18 21.835704551648952 23.916707549741073 30.829108748977923 23.418479149632052 19 22.513818479149634 25.004960479694738 28.453529572090485 24.02769146906514 20 24.451349141455438 25.011937857726902 30.386917416189696 20.149795584627963 21 23.903406922867266 26.896920141727993 29.075606432270373 20.12406650313437 22 21.84769692014173 23.38075769964568 28.756827473426 26.01471790678659 23 22.446007086399565 26.648133006268736 28.651512673753064 22.25434723357863 24 23.102534750613245 24.7912782774598 27.813791223766692 24.29239574816026 25 21.152575633687654 28.722594712455713 26.9363859362224 23.188443717634232 26 21.34663396020714 24.650640501499048 29.838539111474518 24.1641864268193 27 23.78675388389207 25.0206595802671 28.272117743254295 22.920468792586533 28 20.624257290814935 25.305205778141183 30.495938947942218 23.574597983101665 29 24.164404469882804 24.549468520032704 28.007849550286178 23.27827745979831 30 21.965222131370947 26.590351594439905 29.7340964840556 21.71032979013355 31 23.17710547833197 24.939111474516217 25.704660670482422 26.179122376669394 32 24.344289997274462 27.61689833742164 25.42316707549741 22.615644589806486 33 22.332842736440448 26.432270373398747 25.872117743254293 25.362769146906516 34 23.130226219678388 24.23614063777596 28.02965385663669 24.603979285908967 35 22.88165712728264 23.96642136822022 26.95557372581085 26.19634777868629 36 22.492014172799127 25.746742981738898 26.345489234123736 25.41575361133824 37 20.41864268192968 26.788116653038973 28.975960752248568 23.817279912782773 38 19.802234941400926 28.083946579449442 25.070373398746256 27.043445080403377 39 22.61499046061597 26.040883074407194 27.849332243118013 23.494794221858818 40 21.6691196511311 24.540964840556008 29.214717906786593 24.575197601526302 41 19.89010629599346 24.971599890978467 27.968165712728265 27.170128100299813 42 21.009539384028344 23.95857181793404 28.882202234941403 26.149686563096214 43 22.896266012537474 23.55584627964023 27.196293267920414 26.35159443990188 44 21.89065140365222 24.086563096211503 28.345162169528482 25.677623330607798 45 21.634886890160807 23.229217770509674 27.94156445898065 27.194330880348872 46 24.088525483783048 25.205560098119378 27.26105205778141 23.44486236031616 47 20.42256745707277 24.573235213954757 31.54843281548106 23.455764513491413 48 21.22060506950123 24.23962932679204 28.434559825565547 26.105205778141183 49 21.09195966203325 22.7632597437994 31.008994276369584 25.135786317797766 50 21.025674570727716 22.365549195966203 30.05113109839193 26.557645134914143 51 21.142109566639412 22.356173344235486 27.882474788770782 28.61924230035432 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 245.0 1 541.0 2 837.0 3 3230.5 4 5624.0 5 3687.0 6 1750.0 7 1711.0 8 1672.0 9 1679.5 10 1687.0 11 1641.0 12 1595.0 13 1577.5 14 1560.0 15 1490.5 16 1421.0 17 1361.5 18 1302.0 19 1322.0 20 1342.0 21 1374.5 22 1407.0 23 1547.0 24 1687.0 25 2072.0 26 2961.0 27 3465.0 28 3999.5 29 4534.0 30 5388.0 31 6242.0 32 6818.5 33 7395.0 34 7854.0 35 8313.0 36 9498.5 37 10684.0 38 11519.5 39 12355.0 40 14469.5 41 16584.0 42 18426.0 43 20268.0 44 23454.0 45 26640.0 46 39133.0 47 51626.0 48 47886.0 49 44146.0 50 44023.0 51 43900.0 52 38573.0 53 33246.0 54 30393.5 55 27541.0 56 25324.5 57 23108.0 58 21690.5 59 20273.0 60 19353.0 61 18433.0 62 17363.0 63 16293.0 64 14204.0 65 12115.0 66 9993.0 67 7871.0 68 7112.0 69 6353.0 70 5414.0 71 4475.0 72 3948.0 73 3421.0 74 2821.0 75 1674.0 76 1127.0 77 942.5 78 758.0 79 571.5 80 385.0 81 288.5 82 192.0 83 124.0 84 56.0 85 32.5 86 9.0 87 6.5 88 4.0 89 2.5 90 1.0 91 2.0 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 458625.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.48133764900992 #Duplication Level Percentage of deduplicated Percentage of total 1 72.6214940892413 25.040862582667074 2 9.113528846042122 6.284933306287405 3 3.405525261984414 3.522811992921527 4 1.9976651548165434 2.755286668515637 5 1.5446759362674682 2.6631246258369554 6 1.3110545295318674 2.7124148345431305 7 1.1307996098042177 2.7294038211319536 8 0.956063044959974 2.6373066133604333 9 0.8449706810505273 2.6222147421135396 >10 6.961259766767449 39.138697351481625 >50 0.06155853210570834 1.443819614603429 >100 0.04315443487822853 2.5976936412484553 >500 0.005076992338615121 1.4978698487360522 >1k 0.0031731202116344506 4.3535603565527765 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTC 4956 1.0806214227309894 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCG 4901 1.0686290542382122 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGC 4395 0.9582992641046607 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3519 0.7672935404742436 No Hit GCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 2124 0.46312346688470973 TruSeq Adapter, Index 20 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCT 992 0.21629871899700193 No Hit CTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGCT 942 0.20539656582174978 TruSeq Adapter, Index 22 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAATCCT 902 0.19667484328154808 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCC 883 0.19253202507495232 No Hit GAACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCT 882 0.19231398201144725 No Hit CCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 881 0.19209593894794222 TruSeq Adapter, Index 20 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTC 736 0.1604796947397111 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAATCCTCGTA 627 0.13671300081766147 No Hit TCTGTCTCTTATACACATCTGACGCGTCAATCCTCGTATGCCGTCTTCTGC 478 0.1042245843554102 TruSeq Adapter, Index 20 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1804306350504225E-4 0.0 0.0 0.21150177159989098 0.0 2 2.1804306350504225E-4 0.0 0.0 1.069065140365222 0.0 3 2.1804306350504225E-4 0.0 0.0 1.4063777596075224 0.0 4 2.1804306350504225E-4 0.0 0.0 2.0007631507222676 0.0 5 2.1804306350504225E-4 0.0 0.0 4.2075769964568 0.0 6 2.1804306350504225E-4 0.0 0.0 5.0047424366312345 0.0 7 2.1804306350504225E-4 0.0 0.0 5.900681384573454 0.0 8 2.1804306350504225E-4 0.0 0.0 7.1014445352957205 0.0 9 2.1804306350504225E-4 0.0 0.0 7.575906241482693 0.0 10 2.1804306350504225E-4 0.0 0.0 9.69811937857727 0.0 11 2.1804306350504225E-4 0.0 0.0 11.112346688470973 0.0 12 2.1804306350504225E-4 0.0 0.0 13.153011719814664 0.0 13 2.1804306350504225E-4 0.0 0.0 13.680457890433361 0.0 14 2.1804306350504225E-4 0.0 0.0 13.897628781684382 0.0 15 2.1804306350504225E-4 0.0 0.0 14.384736985554648 0.0 16 2.1804306350504225E-4 0.0 0.0 15.08923412373944 0.0 17 2.1804306350504225E-4 0.0 0.0 15.902970836740256 0.0 18 2.1804306350504225E-4 0.0 0.0 16.802398473698556 2.1804306350504225E-4 19 2.1804306350504225E-4 0.0 0.0 17.521940583265195 2.1804306350504225E-4 20 2.1804306350504225E-4 0.0 0.0 18.0411011174707 2.1804306350504225E-4 21 2.1804306350504225E-4 0.0 0.0 18.60844916871082 2.1804306350504225E-4 22 4.360861270100845E-4 0.0 0.0 19.24709730171709 2.1804306350504225E-4 23 4.360861270100845E-4 0.0 0.0 19.855437448896158 2.1804306350504225E-4 24 4.360861270100845E-4 0.0 0.0 20.323139820114474 2.1804306350504225E-4 25 4.360861270100845E-4 0.0 0.0 20.742436631234668 2.1804306350504225E-4 26 4.360861270100845E-4 0.0 0.0 21.13774870536931 2.1804306350504225E-4 27 4.360861270100845E-4 0.0 0.0 21.559225947124556 2.1804306350504225E-4 28 4.360861270100845E-4 0.0 0.0 21.955628236576725 2.1804306350504225E-4 29 4.360861270100845E-4 0.0 0.0 22.364240937585173 2.1804306350504225E-4 30 4.360861270100845E-4 0.0 0.0 22.814499863723086 2.1804306350504225E-4 31 4.360861270100845E-4 0.0 0.0 23.24971381847915 2.1804306350504225E-4 32 4.360861270100845E-4 0.0 0.0 23.669446715726355 2.1804306350504225E-4 33 4.360861270100845E-4 0.0 0.0 24.10291632597438 2.1804306350504225E-4 34 4.360861270100845E-4 0.0 0.0 24.505205778141182 2.1804306350504225E-4 35 4.360861270100845E-4 0.0 0.0 24.9340964840556 2.1804306350504225E-4 36 4.360861270100845E-4 0.0 0.0 25.337912237666938 2.1804306350504225E-4 37 4.360861270100845E-4 0.0 0.0 25.72711910602344 2.1804306350504225E-4 38 4.360861270100845E-4 0.0 0.0 26.12417552466612 2.1804306350504225E-4 39 4.360861270100845E-4 0.0 0.0 26.51730716816571 2.1804306350504225E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACCGG 20 7.028847E-4 45.000004 2 AGCGCGC 20 7.028847E-4 45.000004 45 CGCGTAA 40 6.7993824E-9 45.000004 31 TCGCGTA 40 6.7993824E-9 45.000004 30 CGTATGG 35 1.2097917E-7 45.0 2 TTGCGAC 25 3.8871265E-5 45.0 1 GCGTATG 25 3.8871265E-5 45.0 1 CGTTTTT 1725 0.0 41.73913 1 CGCATGG 60 3.6379788E-12 41.249996 2 CTCGAAT 60 3.6379788E-12 41.249996 43 TATGCGG 50 1.0786607E-9 40.5 2 CGTAACT 50 1.0786607E-9 40.5 33 ACACGAC 45 1.9239451E-8 40.0 26 GCCGACC 45 1.9239451E-8 40.0 14 AGTACGG 85 0.0 39.705883 2 TACGGCT 445 0.0 39.4382 7 CTACGAA 40 3.452169E-7 39.375004 11 ATGGGCG 75 0.0 39.0 5 GCCCTAC 75 0.0 39.0 26 TCACGAC 35 6.2400795E-6 38.571426 25 >>END_MODULE