##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551461_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 522157 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.212821048075575 33.0 31.0 34.0 30.0 34.0 2 32.35405251677177 34.0 31.0 34.0 30.0 34.0 3 32.250625769643996 33.0 31.0 34.0 30.0 34.0 4 35.89453555156782 37.0 35.0 37.0 35.0 37.0 5 35.95859865902401 37.0 35.0 37.0 35.0 37.0 6 35.924945945376585 37.0 35.0 37.0 35.0 37.0 7 36.10368529005644 37.0 35.0 37.0 35.0 37.0 8 35.903119176799315 37.0 35.0 37.0 35.0 37.0 9 37.82570567856028 39.0 38.0 39.0 35.0 39.0 10 37.56787900956992 39.0 37.0 39.0 35.0 39.0 11 37.56209339336636 39.0 37.0 39.0 35.0 39.0 12 37.49537974210822 39.0 37.0 39.0 35.0 39.0 13 37.48578684188855 39.0 37.0 39.0 35.0 39.0 14 38.80541867675814 40.0 38.0 41.0 35.0 41.0 15 38.80326989775106 40.0 38.0 41.0 35.0 41.0 16 38.81751274042099 40.0 38.0 41.0 35.0 41.0 17 38.72187100814506 40.0 38.0 41.0 34.0 41.0 18 38.388982624000064 39.0 38.0 41.0 34.0 41.0 19 38.06278954414094 39.0 37.0 41.0 34.0 41.0 20 37.68081822133956 39.0 35.0 41.0 34.0 41.0 21 37.63122011195866 39.0 35.0 41.0 34.0 41.0 22 37.643731674572976 39.0 35.0 41.0 34.0 41.0 23 37.58764126498352 39.0 35.0 41.0 34.0 41.0 24 37.50319156881934 39.0 35.0 41.0 33.0 41.0 25 37.37169855043598 39.0 35.0 41.0 33.0 41.0 26 37.363902044787295 39.0 35.0 41.0 33.0 41.0 27 37.334110238874516 39.0 35.0 41.0 33.0 41.0 28 37.212560590014114 39.0 35.0 41.0 33.0 41.0 29 37.081163328270996 39.0 35.0 41.0 33.0 41.0 30 36.81483729989256 39.0 35.0 41.0 32.0 41.0 31 36.58216973055997 39.0 35.0 41.0 31.0 41.0 32 36.077495848949646 39.0 35.0 41.0 30.0 41.0 33 35.522540155547084 39.0 35.0 41.0 24.0 41.0 34 34.99762332018914 39.0 35.0 41.0 21.0 41.0 35 34.67402716041344 39.0 35.0 41.0 18.0 41.0 36 34.49298774123491 39.0 35.0 41.0 17.0 41.0 37 34.41349057850417 39.0 35.0 41.0 15.0 41.0 38 34.28983428355839 39.0 35.0 41.0 15.0 41.0 39 34.198099422204436 38.0 34.0 41.0 15.0 41.0 40 34.08944053225371 38.0 34.0 41.0 15.0 41.0 41 33.96090639405389 38.0 34.0 41.0 15.0 41.0 42 33.826146159105406 38.0 34.0 41.0 13.0 41.0 43 33.709912918911364 38.0 34.0 41.0 12.0 41.0 44 33.746924775498556 38.0 34.0 40.0 13.0 41.0 45 33.741943515073054 38.0 34.0 40.0 13.0 41.0 46 33.683392159829324 38.0 33.0 40.0 14.0 41.0 47 33.603393232303695 37.0 33.0 40.0 15.0 41.0 48 33.58448321098827 37.0 33.0 40.0 15.0 41.0 49 33.58533736021924 37.0 33.0 40.0 15.0 41.0 50 33.46344873285238 37.0 33.0 40.0 14.0 41.0 51 32.71453030410394 36.0 32.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 8.0 11 10.0 12 7.0 13 13.0 14 16.0 15 40.0 16 41.0 17 104.0 18 210.0 19 445.0 20 903.0 21 1332.0 22 2112.0 23 3149.0 24 4846.0 25 8584.0 26 13480.0 27 16217.0 28 14569.0 29 12008.0 30 10763.0 31 10677.0 32 12144.0 33 15503.0 34 25975.0 35 36535.0 36 39541.0 37 48292.0 38 85026.0 39 159435.0 40 169.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.40112073571742 16.632162357298665 19.971579429175517 26.995137477808402 2 43.4396168202284 24.209576813104107 18.769833594110583 13.580972772556912 3 25.11734976261929 23.69612970811461 37.22577692150062 13.96074360776548 4 22.480020377013044 19.992454376748757 41.756981137857004 15.770544108381197 5 23.563219491455634 22.97355010083174 36.10887146969207 17.354358938020557 6 20.88452323726389 29.974509582366988 36.27625407683896 12.864713103530164 7 63.28690413036691 4.97838772629688 27.400954119163394 4.333754024172806 8 63.175443401122656 7.4810832757197545 24.531510637605162 4.811962685552429 9 57.56659395545785 6.327215760776932 25.902362699341385 10.203827584423841 10 32.701467183241824 19.688139774052633 33.05404313262103 14.556349910084515 11 26.018994287158844 19.12738888878249 36.709074090742824 18.14454273331584 12 21.16604775958189 17.114201284288058 41.247938838318746 20.471812117811307 13 21.19362567197222 17.70425370147293 44.06912097319389 17.03299965336096 14 18.151820237974402 22.42563060535433 40.49835585848701 18.924193298184264 15 17.403960877667064 20.230122357834905 44.01607179449859 18.349844969999445 16 19.308177425563574 20.510306287189486 39.92362450374121 20.257891783505727 17 19.128729481745914 21.723542919083723 39.33644478576367 19.8112828134067 18 19.222762502465734 21.11702035977685 39.15489019586063 20.505326941896787 19 18.79492183385457 23.179235364076323 37.49542762042834 20.53041518164077 20 20.335454662103544 22.61024940774518 38.84540473459132 18.208891195559957 21 19.824688743040888 24.16610329843323 38.54530342406594 17.463904534459942 22 18.553232073878164 20.5415229519091 39.41592279716637 21.489322177046365 23 19.392826295539464 22.604120982769548 38.64814605568823 19.354906666002755 24 20.105447212236932 21.80608514297424 37.707815848490014 20.380651796298814 25 19.49279622795443 24.76802953900838 36.136449382082404 19.60272485095479 26 18.310201720938338 22.042029504535993 38.25267113147961 21.395097643046057 27 21.148237024496463 21.242844585057753 36.88430874238974 20.724609648056045 28 18.726743106000683 22.367602081366332 38.387304967662985 20.51834984497 29 19.866247124906877 22.082247293438563 37.26484563072026 20.786659950934297 30 19.316604009905067 22.99308445544156 37.33225830545219 20.35805322920118 31 20.300790758335136 21.42516522808274 36.32470693680253 21.94933707677959 32 20.657196973324115 23.09765070658825 36.69337000174277 19.551782318344866 33 20.93450820347137 21.719521140193468 35.70994930643466 21.63602134990051 34 21.547925240875827 23.145529026710356 34.72480499160214 20.58174074081167 35 21.122765758191502 22.49993775818384 33.11264619645049 23.264650287174163 36 21.863347613840283 24.849805709776945 32.70280777620524 20.584038900177532 37 21.458680052168216 23.29701603157671 34.047614031795035 21.19668988446004 38 20.763869870556174 23.533534932979926 33.30186131757307 22.400733878890833 39 23.614353537346048 22.889667283977808 32.76447505252252 20.731504126153627 40 21.373265129070376 22.4095434897933 34.46970930199155 21.747482079144778 41 21.89169157935257 24.216662804482176 31.64795262727494 22.243692988890317 42 21.108785288715843 24.095434897932996 32.85735899355941 21.938420819791748 43 22.566009839952354 23.151082911844522 32.01872233830055 22.264184909902575 44 21.7670164337546 22.86247239814845 32.814460018729996 22.556051149366954 45 21.32251410974094 21.857027675584163 33.049829840450286 23.77062837422461 46 22.78778221875796 23.620864988882655 32.40232343911889 21.189029353240503 47 19.86701317802883 23.116227494795627 36.09680613302129 20.919953194154246 48 20.396355885298867 22.786250112514054 33.91987467370925 22.897519328477834 49 20.265552314725266 21.603464092217475 35.84036985044728 22.29061374260998 50 19.941320330858343 21.189029353240503 36.077654804972454 22.791995510928707 51 19.749040997247956 21.5467761611929 34.256555020807916 24.44762782075123 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 282.0 1 577.0 2 872.0 3 15316.5 4 29761.0 5 18845.0 6 7929.0 7 7827.0 8 7725.0 9 7644.0 10 7563.0 11 7470.0 12 7377.0 13 7099.0 14 6821.0 15 6406.0 16 5991.0 17 5522.5 18 5054.0 19 4747.5 20 4441.0 21 4137.0 22 3833.0 23 3674.5 24 3516.0 25 3759.5 26 4307.5 27 4612.0 28 4793.0 29 4974.0 30 5552.5 31 6131.0 32 6828.5 33 7526.0 34 8262.5 35 8999.0 36 9870.0 37 10741.0 38 11612.0 39 12483.0 40 14188.5 41 15894.0 42 17374.5 43 18855.0 44 21092.0 45 23329.0 46 38264.5 47 53200.0 48 47547.0 49 41894.0 50 41176.5 51 40459.0 52 35803.5 53 31148.0 54 28633.5 55 26119.0 56 24848.5 57 23578.0 58 21909.5 59 20241.0 60 19321.0 61 18401.0 62 17393.0 63 16385.0 64 14741.5 65 13098.0 66 11227.0 67 9356.0 68 7807.5 69 6259.0 70 5503.0 71 4747.0 72 4078.5 73 3410.0 74 2853.5 75 1829.0 76 1361.0 77 1096.5 78 832.0 79 599.5 80 367.0 81 262.5 82 158.0 83 117.0 84 76.0 85 58.5 86 41.0 87 27.0 88 13.0 89 7.5 90 2.0 91 1.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 522157.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.567248338629255 #Duplication Level Percentage of deduplicated Percentage of total 1 73.20660573656451 31.89410372153027 2 9.00696600196222 7.848174491701576 3 4.623351173079156 6.042800661426974 4 3.1232835520058515 5.4429148056878 5 2.305701835599617 5.022654223320091 6 1.7749457203546766 4.639770059176763 7 1.4166924009294322 4.320497275551904 8 1.1418761616790913 3.9798721846266996 9 0.8174294123525395 3.2051835186536577 >10 2.519023358901704 15.124128479493997 >50 0.03184120381758411 0.9577692215169764 >100 0.022996424975185042 1.817468731706908 >500 0.005306867301965779 1.69820517346175 >1k 0.003095672592813371 2.8037533111204205 >5k 4.4223894183048157E-4 1.3190279802041232 >10k+ 4.4223894183048157E-4 3.8836761608201154 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20157 3.860333194805394 No Hit GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 6846 1.3110999182238292 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 4133 0.7915243882587039 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 3606 0.6905968894412983 No Hit GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 1994 0.38187748129394034 No Hit GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1398 0.2677355661228328 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC 1294 0.2478181849520355 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT 1093 0.20932401557385996 No Hit GAATGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT 1034 0.19802473202504225 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC 957 0.18327820942743275 No Hit CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 954 0.18270366958596743 No Hit GAATGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT 866 0.16585050090298512 No Hit CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 811 0.15531727047612118 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT 793 0.15187003142732933 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTTTGCGT 773 0.14803976581756062 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 655 0.12544119871992523 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 646 0.12371757919552931 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 641 0.12276001279308713 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 606 0.1160570479759919 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTA 590 0.11299283548817693 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08215919732953882 0.0 2 0.0 0.0 0.0 0.5414080439408071 0.0 3 0.0 0.0 0.0 0.9248176314786549 0.0 4 0.0 0.0 0.0 1.683976275334813 0.0 5 0.0 0.0 0.0 3.906870921964084 0.0 6 0.0 0.0 0.0 5.2890222672491225 0.0 7 0.0 0.0 0.0 6.382946125399066 0.0 8 0.0 0.0 0.0 7.710707699025389 0.0 9 0.0 0.0 0.0 8.491698856857228 0.0 10 0.0 0.0 0.0 10.337886880765748 0.0 11 0.0 0.0 0.0 11.438322190452297 0.0 12 0.0 0.0 0.0 13.013518922469679 0.0 13 0.0 0.0 0.0 13.528881160264058 0.0 14 0.0 0.0 0.0 13.814810488033293 0.0 15 0.0 0.0 0.0 14.17753664127839 0.0 16 0.0 0.0 0.0 14.55807352960891 0.0 17 0.0 0.0 0.0 14.967911949854162 0.0 18 0.0 0.0 0.0 15.448801797160623 0.0 19 0.0 0.0 0.0 15.897708926625517 0.0 20 0.0 0.0 0.0 16.225962689382694 0.0 21 0.0 0.0 0.0 16.527021566310516 0.0 22 0.0 0.0 0.0 16.83957124006764 0.0 23 0.0 0.0 0.0 17.15441907319063 0.0 24 0.0 0.0 0.0 17.438816294715956 0.0 25 0.0 0.0 0.0 17.687783559350923 0.0 26 0.0 0.0 0.0 17.94900767393715 0.0 27 1.9151328048843546E-4 0.0 0.0 18.228617063450265 0.0 28 1.9151328048843546E-4 0.0 0.0 18.48735150539014 0.0 29 1.9151328048843546E-4 0.0 0.0 18.75566161135444 0.0 30 1.9151328048843546E-4 0.0 0.0 19.067828258550588 0.0 31 1.9151328048843546E-4 0.0 0.0 19.331159019222188 0.0 32 1.9151328048843546E-4 0.0 0.0 19.60176728455235 0.0 33 1.9151328048843546E-4 0.0 0.0 19.856288434321478 0.0 34 1.9151328048843546E-4 0.0 0.0 20.10717083176133 0.0 35 1.9151328048843546E-4 0.0 0.0 20.374523371323185 0.0 36 1.9151328048843546E-4 0.0 0.0 20.629044521092315 0.0 37 1.9151328048843546E-4 0.0 0.0 20.89869522002003 0.0 38 1.9151328048843546E-4 0.0 0.0 21.188454813399034 0.0 39 3.8302656097687093E-4 0.0 0.0 21.49851481450981 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTAAC 30 2.1632168E-6 45.000004 32 TATTGCG 20 7.029746E-4 45.0 1 ACGATAG 25 3.8878712E-5 45.0 1 CGTTTTT 8915 0.0 44.268085 1 TACGAAT 65 0.0 41.538464 12 GCTACGA 65 0.0 41.538464 10 CCTATGC 65 0.0 41.538464 35 ATTGCGG 50 1.0786607E-9 40.5 2 CACGACC 45 1.9248546E-8 40.0 27 ACGACCA 45 1.9248546E-8 40.0 28 CGGGCAC 40 3.4533878E-7 39.375 6 GCGATAC 40 3.4533878E-7 39.375 9 GTTTTTT 10115 0.0 39.238754 2 ACCCGTC 35 6.2417403E-6 38.571426 39 CACGTGA 35 6.2417403E-6 38.571426 43 CGCGTAA 35 6.2417403E-6 38.571426 31 AACAGCG 35 6.2417403E-6 38.571426 1 TCGCGTA 35 6.2417403E-6 38.571426 30 AACACGT 35 6.2417403E-6 38.571426 41 AACGGGC 65 9.094947E-12 38.076927 4 >>END_MODULE