SRR3551458_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551458_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	459436
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3667	0.7981525174344195	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	1009	0.21961709574347676	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC	704	0.15323135322438816	No Hit
CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT	531	0.11557648943487232	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	526	0.11448819857390366	No Hit
CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	495	0.10774079523589793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAAA	20	7.028859E-4	45.000004	22
GCGATTA	35	1.2097917E-7	45.000004	9
AATTCGG	20	7.028859E-4	45.000004	2
TACTACG	20	7.028859E-4	45.000004	1
TATACGG	20	7.028859E-4	45.000004	2
TATCGCG	20	7.028859E-4	45.000004	1
TCGTTTA	25	3.8871367E-5	45.0	38
CGCATGG	55	1.8189894E-12	45.0	2
CATCGTT	25	3.8871367E-5	45.0	36
CCGGTAT	25	3.8871367E-5	45.0	42
CGGTATT	25	3.8871367E-5	45.0	43
GCATCGT	25	3.8871367E-5	45.0	35
TACCGGT	25	3.8871367E-5	45.0	40
TAGCACG	30	2.1626456E-6	44.999996	1
GCGATAT	30	2.1626456E-6	44.999996	9
GGCGATT	115	0.0	43.043476	8
TATTAGT	70	0.0	41.785717	30
ACTACGG	50	1.0786607E-9	40.5	2
CGCTTGG	50	1.0786607E-9	40.5	2
CGTTTTT	1665	0.0	40.405403	1