##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551458_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 459436 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22979043871181 33.0 31.0 34.0 30.0 34.0 2 32.27857198826387 34.0 31.0 34.0 30.0 34.0 3 32.264528682993934 34.0 31.0 34.0 30.0 34.0 4 35.82600188056661 37.0 35.0 37.0 35.0 37.0 5 35.9067748282677 37.0 35.0 37.0 35.0 37.0 6 35.908944880244476 37.0 35.0 37.0 35.0 37.0 7 36.034995080925306 37.0 35.0 37.0 35.0 37.0 8 35.929341627560746 37.0 35.0 37.0 35.0 37.0 9 37.802980175693676 39.0 38.0 39.0 35.0 39.0 10 37.47035495694721 39.0 37.0 39.0 35.0 39.0 11 37.49136985347252 39.0 37.0 39.0 35.0 39.0 12 37.398157741230555 39.0 37.0 39.0 35.0 39.0 13 37.398529936705 39.0 37.0 39.0 35.0 39.0 14 38.645602434288996 40.0 38.0 41.0 35.0 41.0 15 38.705373544955116 40.0 38.0 41.0 35.0 41.0 16 38.694436221802384 40.0 38.0 41.0 35.0 41.0 17 38.62469636684979 40.0 38.0 41.0 35.0 41.0 18 38.49243202535283 40.0 38.0 41.0 34.0 41.0 19 38.45622241182667 40.0 37.0 41.0 34.0 41.0 20 38.3617892372387 40.0 37.0 41.0 34.0 41.0 21 38.2499499386204 40.0 37.0 41.0 34.0 41.0 22 38.23933910272595 40.0 37.0 41.0 34.0 41.0 23 38.22492577856328 40.0 37.0 41.0 34.0 41.0 24 38.188729224527464 40.0 37.0 41.0 34.0 41.0 25 37.97234652922278 40.0 36.0 41.0 34.0 41.0 26 38.057603235271074 40.0 36.0 41.0 34.0 41.0 27 38.02762952837827 40.0 36.0 41.0 34.0 41.0 28 37.816525043749294 40.0 36.0 41.0 33.0 41.0 29 37.61134956773087 40.0 36.0 41.0 33.0 41.0 30 37.49300011318225 40.0 35.0 41.0 33.0 41.0 31 37.50425957042983 40.0 35.0 41.0 33.0 41.0 32 37.46064740246737 40.0 35.0 41.0 33.0 41.0 33 37.33145421778006 40.0 35.0 41.0 33.0 41.0 34 37.180279734282905 40.0 35.0 41.0 32.0 41.0 35 37.07475034607649 40.0 35.0 41.0 32.0 41.0 36 36.9616029218433 40.0 35.0 41.0 31.0 41.0 37 36.90464395476192 40.0 35.0 41.0 31.0 41.0 38 36.7525400708695 39.0 35.0 41.0 31.0 41.0 39 36.68197311486257 39.0 35.0 41.0 31.0 41.0 40 36.6309083310842 39.0 35.0 41.0 31.0 41.0 41 36.49129149653053 39.0 35.0 41.0 30.0 41.0 42 36.38586223108333 39.0 35.0 41.0 30.0 41.0 43 36.219403790734724 39.0 35.0 41.0 30.0 41.0 44 36.25072697829513 39.0 35.0 41.0 30.0 41.0 45 36.228671675706735 39.0 35.0 41.0 30.0 41.0 46 36.09940884040432 39.0 35.0 41.0 30.0 41.0 47 36.10444109734544 38.0 35.0 41.0 30.0 41.0 48 36.02548124221872 38.0 35.0 41.0 30.0 41.0 49 35.87051515336195 38.0 35.0 41.0 29.0 41.0 50 35.732221680495215 38.0 35.0 41.0 29.0 41.0 51 34.92253327993453 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 5.0 10 7.0 11 5.0 12 7.0 13 9.0 14 13.0 15 19.0 16 33.0 17 75.0 18 125.0 19 200.0 20 390.0 21 585.0 22 952.0 23 1401.0 24 2070.0 25 3146.0 26 4484.0 27 5356.0 28 5846.0 29 6008.0 30 6677.0 31 8005.0 32 9870.0 33 13428.0 34 25309.0 35 34846.0 36 32581.0 37 48486.0 38 84350.0 39 164970.0 40 176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.499064069859564 20.120321437588697 23.699710079314638 13.6809044132371 2 34.84337317928939 23.940875334105293 23.796785624113042 17.41896586249227 3 32.413872661262936 23.190607614553496 27.847839524982803 16.54768019920076 4 28.98662708190042 24.806066568575382 27.049034033031806 19.158272316492393 5 24.825873462245013 29.536431624861788 25.880209648351453 19.757485264541742 6 25.55676960447157 34.47640150097075 25.03199575131248 14.934833143245196 7 77.34918465248695 6.9998868177504585 10.848300960307855 4.802627569454723 8 77.8722172402685 6.490566694817124 10.48590010360529 5.151315961309083 9 71.01228462723861 9.467042199566425 12.586083807102622 6.9345893660923394 10 37.66291714188701 26.211703044602512 20.35909245248522 15.766287361025258 11 29.554279594981676 26.193419758138237 24.579484411321708 19.67281623555838 12 26.70426348827693 21.323100497131264 31.741526567356498 20.23110944723531 13 26.450691717671234 22.542421577760557 30.715268285463047 20.291618419105166 14 21.555559425034172 27.271045368669412 30.039874977145892 21.133520229150523 15 20.90998528630756 24.23144899398393 34.725184791788195 20.13338092792032 16 22.749632157688993 24.831314916549857 30.806684717784417 21.612368207976736 17 23.0341113887462 22.38657832646985 28.796176181230898 25.783134103553053 18 25.75440322482348 22.370253963555314 29.15226495093985 22.723077860681357 19 26.50967708233573 23.939569385072133 27.859593066281267 21.69116046631087 20 25.486466014852994 24.088665233024837 27.461278611166733 22.963590140955432 21 26.02429935834371 24.644128888463246 28.795523206714318 20.536048546478728 22 23.14076389312113 24.91903115994393 27.116290408239667 24.82391453869527 23 22.876091555733552 24.53660575139954 27.667618558406392 24.919684134460514 24 23.02518740368626 24.039474486109054 27.456272473206276 25.479065636998406 25 22.51216709182563 25.096422570281824 27.417964634900184 24.973445702992365 26 21.036227026179922 25.31299245161459 27.5701076972636 26.080672824941885 27 23.563891379865748 24.056669481712362 28.26683150645574 24.11260763196615 28 23.37039326478552 24.893565153797265 28.760697899163322 22.975343682253893 29 23.3536335855266 24.22992538677857 28.864085530955347 23.55235549673948 30 24.776900373501423 24.837844661715668 27.316971243002293 23.06828372178062 31 23.61242915226495 28.17367380875682 25.413768185340285 22.80012885363794 32 23.797220940457432 27.523093532069755 26.096561871512026 22.583123655960787 33 24.598420672302563 25.308856946342907 27.253850373066108 22.838872008288426 34 23.68229742553914 26.269382460233853 26.35840465266109 23.68991546156592 35 23.31445511453173 26.51620682750154 26.313784727361373 23.85555333060535 36 23.416319139118396 26.832899468043426 27.48826822451876 22.262513168319416 37 23.09048485534438 28.721301769996256 26.42283147163043 21.76538190302893 38 23.70166900286438 27.584037820284003 24.930567043070198 23.783726133781418 39 25.752226643101544 24.524416893756694 26.62416528090964 23.09919118223213 40 24.88812369949242 24.734892346268033 27.648029322908958 22.728954631330588 41 21.524869622754856 26.03779416501972 27.21684848379317 25.22048772843225 42 22.910699205112355 26.073707763431685 27.824985416902464 23.190607614553496 43 22.832559921294802 25.25988385759932 28.352153509955684 23.55540271115019 44 22.906128383496288 24.281510373588485 26.93149862004719 25.88086262286804 45 23.246981081151674 24.158968822643416 26.854229968918414 25.7398201272865 46 23.633541994967743 26.130734204546446 26.594346111319094 23.641377689166717 47 21.410599082353148 25.99056234165368 28.05831497749415 24.54052359849903 48 21.839168023402607 24.936661471891625 28.27031403721084 24.95385646749493 49 23.638765791100393 24.288910751443073 29.00730460825882 23.065018849197713 50 22.06749144603383 24.20641830418165 29.175336717192383 24.550753532592136 51 22.41422091433845 24.850468835702905 27.144585970624853 25.59072427933379 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 196.0 1 600.5 2 1005.0 3 3361.0 4 5717.0 5 3742.5 6 1768.0 7 1745.0 8 1722.0 9 1666.0 10 1610.0 11 1642.0 12 1674.0 13 1628.0 14 1582.0 15 1583.0 16 1584.0 17 1513.0 18 1442.0 19 1522.5 20 1603.0 21 1653.5 22 1704.0 23 1738.0 24 1772.0 25 2085.0 26 3022.0 27 3646.0 28 4268.5 29 4891.0 30 5519.0 31 6147.0 32 6725.5 33 7304.0 34 8273.0 35 9242.0 36 9774.5 37 10307.0 38 11553.5 39 12800.0 40 15463.5 41 18127.0 42 20260.0 43 22393.0 44 27129.5 45 31866.0 46 35657.0 47 39448.0 48 39595.0 49 39742.0 50 35837.0 51 31932.0 52 29480.0 53 27028.0 54 26251.5 55 25475.0 56 25066.0 57 24657.0 58 24920.0 59 25183.0 60 24541.0 61 23899.0 62 21706.0 63 19513.0 64 16716.0 65 13919.0 66 12008.5 67 10098.0 68 8834.0 69 7570.0 70 6742.0 71 5914.0 72 5220.0 73 4526.0 74 3942.5 75 2767.5 76 2176.0 77 1705.5 78 1235.0 79 973.0 80 711.0 81 535.0 82 359.0 83 241.0 84 123.0 85 76.0 86 29.0 87 25.5 88 22.0 89 16.5 90 11.0 91 8.5 92 6.0 93 3.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 459436.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.610686278028794 #Duplication Level Percentage of deduplicated Percentage of total 1 74.86594098776617 25.911615964369922 2 8.204622251202606 5.679352135322156 3 2.9089856720901013 3.0204597145197374 4 1.7111767142089878 2.369000016870217 5 1.2674480894090776 2.193362409811229 6 1.020826852467261 2.1198910760959175 7 0.9114390050432802 2.2081870625578173 8 0.8150206231302357 2.25667384778273 9 0.6676674516125733 2.0797585835232373 >10 7.51150345816991 46.61797977286618 >50 0.07691259659986859 1.8016488062436042 >100 0.03530414270157903 2.337539501185386 >500 0.001891293359013162 0.3842441017070349 >1k 0.001260862239342108 1.020287007144858 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3667 0.7981525174344195 No Hit GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 1009 0.21961709574347676 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCC 704 0.15323135322438816 No Hit CTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGCT 531 0.11557648943487232 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 526 0.11448819857390366 No Hit CCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC 495 0.10774079523589793 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12036496922313446 0.0 2 0.0 0.0 0.0 0.6024778206322534 0.0 3 0.0 0.0 0.0 0.894139771371856 0.0 4 0.0 0.0 0.0 1.259587842485134 0.0 5 0.0 0.0 0.0 2.2745278994245117 0.0 6 0.0 0.0 0.0 2.9372970337544295 0.0 7 0.0 0.0 0.0 3.5482635231022384 0.0 8 0.0 0.0 0.0 4.50334758268834 0.0 9 0.0 0.0 0.0 4.9347460799763185 0.0 10 0.0 0.0 0.0 5.862622868038203 0.0 11 0.0 0.0 0.0 7.0358004161624255 0.0 12 0.0 0.0 0.0 8.026798074160492 0.0 13 0.0 0.0 0.0 8.57769090798283 0.0 14 0.0 0.0 0.0 8.87501197119947 0.0 15 0.0 0.0 0.0 9.200193280456908 0.0 16 0.0 0.0 0.0 9.812901035182266 0.0 17 0.0 0.0 0.0 10.495912379526201 0.0 18 0.0 0.0 0.0 11.350220705386604 0.0 19 0.0 0.0 0.0 11.779224962780452 0.0 20 0.0 0.0 0.0 12.207358587485526 0.0 21 0.0 0.0 0.0 12.69208333696097 0.0 22 0.0 0.0 0.0 13.19987985268895 0.0 23 0.0 0.0 0.0 13.709417633794478 0.0 24 0.0 0.0 0.0 14.112955885041659 0.0 25 0.0 0.0 0.0 14.489069206592431 0.0 26 2.176581721937332E-4 0.0 0.0 14.84755221619551 0.0 27 2.176581721937332E-4 0.0 0.0 15.20320566956007 0.0 28 2.176581721937332E-4 0.0 0.0 15.551241086897848 0.0 29 2.176581721937332E-4 0.0 0.0 15.931054597375914 0.0 30 2.176581721937332E-4 0.0 0.0 16.332416266901156 0.0 31 2.176581721937332E-4 0.0 0.0 16.700258577908567 0.0 32 2.176581721937332E-4 0.0 0.0 17.095525818612387 0.0 33 2.176581721937332E-4 0.0 0.0 17.527359632244753 0.0 34 2.176581721937332E-4 0.0 0.0 17.970076354486807 0.0 35 2.176581721937332E-4 0.0 0.0 18.389285994131935 0.0 36 2.176581721937332E-4 0.0 0.0 18.763005075788577 0.0 37 2.176581721937332E-4 0.0 0.0 19.136724157445215 0.0 38 2.176581721937332E-4 0.0 0.0 19.513925769856954 0.0 39 4.353163443874664E-4 0.0 0.0 19.973837487702312 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGAAA 20 7.028859E-4 45.000004 22 GCGATTA 35 1.2097917E-7 45.000004 9 AATTCGG 20 7.028859E-4 45.000004 2 TACTACG 20 7.028859E-4 45.000004 1 TATACGG 20 7.028859E-4 45.000004 2 TATCGCG 20 7.028859E-4 45.000004 1 TCGTTTA 25 3.8871367E-5 45.0 38 CGCATGG 55 1.8189894E-12 45.0 2 CATCGTT 25 3.8871367E-5 45.0 36 CCGGTAT 25 3.8871367E-5 45.0 42 CGGTATT 25 3.8871367E-5 45.0 43 GCATCGT 25 3.8871367E-5 45.0 35 TACCGGT 25 3.8871367E-5 45.0 40 TAGCACG 30 2.1626456E-6 44.999996 1 GCGATAT 30 2.1626456E-6 44.999996 9 GGCGATT 115 0.0 43.043476 8 TATTAGT 70 0.0 41.785717 30 ACTACGG 50 1.0786607E-9 40.5 2 CGCTTGG 50 1.0786607E-9 40.5 2 CGTTTTT 1665 0.0 40.405403 1 >>END_MODULE