##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551456_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 333357 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26988483817649 33.0 31.0 34.0 30.0 34.0 2 32.359509474827284 34.0 31.0 34.0 30.0 34.0 3 32.3391589197167 34.0 31.0 34.0 30.0 34.0 4 35.916086957825996 37.0 35.0 37.0 35.0 37.0 5 35.979265472151475 37.0 35.0 37.0 35.0 37.0 6 35.959145900641055 37.0 35.0 37.0 35.0 37.0 7 36.134849425690774 37.0 36.0 37.0 35.0 37.0 8 35.98608998761088 37.0 35.0 37.0 35.0 37.0 9 37.87449491086133 39.0 38.0 39.0 35.0 39.0 10 37.51432548289071 39.0 37.0 39.0 35.0 39.0 11 37.5254516929298 39.0 37.0 39.0 35.0 39.0 12 37.487069418071314 39.0 37.0 39.0 35.0 39.0 13 37.50020248562352 39.0 37.0 39.0 35.0 39.0 14 38.76548865030583 40.0 38.0 41.0 35.0 41.0 15 38.82373551477845 40.0 38.0 41.0 35.0 41.0 16 38.7993442465585 40.0 38.0 41.0 35.0 41.0 17 38.76576463071122 40.0 38.0 41.0 35.0 41.0 18 38.62542559478277 40.0 38.0 41.0 35.0 41.0 19 38.49294000125991 40.0 37.0 41.0 35.0 41.0 20 38.375276355378766 40.0 37.0 41.0 34.0 41.0 21 38.268840912295225 40.0 37.0 41.0 34.0 41.0 22 38.281080043316926 40.0 37.0 41.0 34.0 41.0 23 38.24240078954394 40.0 37.0 41.0 34.0 41.0 24 38.17518756168312 40.0 37.0 41.0 34.0 41.0 25 37.96348959223895 40.0 36.0 41.0 34.0 41.0 26 37.99040668112564 40.0 36.0 41.0 34.0 41.0 27 37.989737728621265 40.0 36.0 41.0 34.0 41.0 28 37.916302942491086 40.0 36.0 41.0 34.0 41.0 29 37.843048143581804 40.0 36.0 41.0 34.0 41.0 30 37.64563815969066 40.0 36.0 41.0 33.0 41.0 31 37.54520529042438 40.0 35.0 41.0 33.0 41.0 32 37.38311179906227 40.0 35.0 41.0 33.0 41.0 33 37.18461589227165 40.0 35.0 41.0 32.0 41.0 34 36.970176117495654 40.0 35.0 41.0 31.0 41.0 35 36.81717498057638 40.0 35.0 41.0 31.0 41.0 36 36.69354175853515 39.0 35.0 41.0 31.0 41.0 37 36.63372600545361 39.0 35.0 41.0 31.0 41.0 38 36.54364540117652 39.0 35.0 41.0 30.0 41.0 39 36.47590121101402 39.0 35.0 41.0 30.0 41.0 40 36.36128534874024 39.0 35.0 41.0 30.0 41.0 41 36.267503007286486 39.0 35.0 41.0 30.0 41.0 42 36.1863917661846 39.0 35.0 41.0 30.0 41.0 43 36.099784915271016 39.0 35.0 41.0 30.0 41.0 44 36.13105169532963 39.0 35.0 41.0 30.0 41.0 45 36.0988099844911 39.0 35.0 41.0 30.0 41.0 46 36.015640889496844 39.0 35.0 41.0 30.0 41.0 47 35.929891977669584 39.0 35.0 41.0 29.0 41.0 48 35.86205479410962 38.0 35.0 41.0 29.0 41.0 49 35.807983633162046 38.0 35.0 41.0 29.0 41.0 50 35.73055913030175 38.0 35.0 40.0 29.0 41.0 51 34.89639335607172 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 4.0 10 6.0 11 11.0 12 13.0 13 11.0 14 14.0 15 16.0 16 38.0 17 63.0 18 78.0 19 151.0 20 251.0 21 469.0 22 620.0 23 1015.0 24 1556.0 25 2433.0 26 3535.0 27 4351.0 28 4393.0 29 4372.0 30 4751.0 31 5551.0 32 6813.0 33 9466.0 34 17019.0 35 24072.0 36 25096.0 37 36643.0 38 65830.0 39 114589.0 40 123.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.975632730076164 20.503244269656854 23.419037248355366 17.102085751911613 2 35.11820660733088 24.631551159867648 23.85760610996619 16.392636122835277 3 30.94280306098267 23.19645305183332 29.832581886686043 16.028162000497964 4 28.43078141451957 24.317473459384384 28.97914248088386 18.272602645212192 5 24.660649093914333 28.588870190216493 27.437851912514212 19.31262880335496 6 24.674748092885405 33.25803867925377 26.82319555311573 15.244017674745091 7 74.66979844431046 6.664026854093359 13.463944059971741 5.202230641624444 8 75.28805454812708 6.167862081792193 13.057172940721209 5.486910429359516 9 69.0760955972126 7.976433673209201 15.417705342920653 7.529765386657547 10 36.5776029901877 23.183253988966783 23.625722573697267 16.613420447148254 11 29.175928509075856 23.651220763325803 26.333030354844805 20.839820372753532 12 24.258977612589504 21.178196348059288 32.73067612199534 21.832149917355867 13 23.476633159045708 22.22062233581416 33.86849533683108 20.434249168309048 14 20.88181739096524 25.125316102556717 32.165516248346364 21.827350258131673 15 20.373353491902073 23.67401914464073 34.56504588174239 21.387581481714797 16 21.729257222737186 23.013766022612394 33.028854951298456 22.22812180335196 17 22.18672474254328 23.25794868564332 30.835410685841307 23.719915885972096 18 22.001337905008743 23.822808580590777 31.642953350312126 22.53290016408835 19 22.853877374706396 24.270976760649994 30.02936791487804 22.845777949765566 20 23.21415179522254 25.04342191704389 30.38334278266243 21.359083505071137 21 24.08858971013058 24.699346346409403 30.43853886374067 20.77352507971934 22 22.44410646844074 23.530029367914878 28.88344927510147 25.142414888542913 23 22.147727511346694 24.47556223508131 29.831381971879996 23.545328281691997 24 22.357412623703716 24.438064897392287 30.325746871972093 22.87877560693191 25 22.315115626790497 25.449593078891397 28.950044546837173 23.28524674748093 26 21.23489232264509 25.10221774254028 29.70899066166302 23.953899273151606 27 22.89017479758937 24.65314962637653 29.61029766886551 22.84637790716859 28 21.58616738211587 24.432665280765065 30.01676880941453 23.96439852770453 29 22.64509219845391 23.727715332211414 28.92904603773132 24.69814643160336 30 22.891974669798447 25.31070294009125 28.230995599312447 23.566326790797852 31 24.0078954394238 24.885933098749987 26.571513422547 24.53465803927921 32 24.141385961596725 25.80536781888486 26.705303923421436 23.347942296096978 33 24.43326523816809 25.080619276031403 26.596711633474023 23.889403852326485 34 22.79778135752362 24.350171137849212 28.14910141379962 24.702946090827552 35 24.85893501561389 23.549527983513173 27.2161676520967 24.37536934877624 36 24.521758955114187 25.44869314278686 27.562943031044796 22.466604871054155 37 23.366540975590734 25.874662898934176 28.585870403201376 22.172925722273717 38 24.376569263582283 25.178412332724378 27.463350102142748 22.981668301550588 39 24.740143449815065 23.30594527788527 28.993541458556443 22.960369813743224 40 24.141385961596725 23.593924831336974 30.53483202692609 21.72985718014021 41 22.51340154849006 24.303074481711796 29.39131321676161 23.792210753036535 42 22.31391571198445 24.910231373572476 29.3664149845361 23.409437929906975 43 23.1910534352061 23.790410880827462 29.31361873306995 23.704916950896486 44 23.231550559910247 23.570826471320537 28.439780775564934 24.757842193204283 45 23.440635714864243 23.2402499422541 28.259193597254594 25.05992074562706 46 24.036093437365945 23.859405982175268 28.58017080787264 23.524329772586146 47 22.61209454128757 24.32647282042975 29.82388250434219 23.23755013394049 48 22.000137990202695 23.77361207354278 29.56350099142961 24.662748944824916 49 22.82267958974913 23.00326676805947 30.585828406183165 23.588225236008242 50 21.938342377691182 22.72578646916069 30.468536733891895 24.86733441925623 51 22.535000014998936 22.549099013970007 28.79735538776747 26.118545583263586 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 238.0 1 489.5 2 741.0 3 3676.5 4 6612.0 5 4224.5 6 1837.0 7 1766.0 8 1695.0 9 1712.0 10 1729.0 11 1707.5 12 1686.0 13 1677.5 14 1669.0 15 1603.0 16 1537.0 17 1446.5 18 1356.0 19 1354.0 20 1352.0 21 1387.5 22 1423.0 23 1576.0 24 1729.0 25 1957.5 26 2452.0 27 2718.0 28 3201.0 29 3684.0 30 4340.5 31 4997.0 32 5459.5 33 5922.0 34 6387.0 35 6852.0 36 7177.0 37 7502.0 38 7982.0 39 8462.0 40 9820.0 41 11178.0 42 12320.5 43 13463.0 44 15097.0 45 16731.0 46 18426.0 47 20121.0 48 23884.5 49 27648.0 50 29012.5 51 30377.0 52 29916.0 53 29455.0 54 25678.5 55 21902.0 56 20278.0 57 18654.0 58 17307.0 59 15960.0 60 15251.5 61 14543.0 62 13483.5 63 12424.0 64 11154.0 65 9884.0 66 8531.5 67 7179.0 68 6378.0 69 5577.0 70 4803.0 71 4029.0 72 3621.0 73 3213.0 74 2701.0 75 1765.0 76 1341.0 77 1048.5 78 756.0 79 614.5 80 473.0 81 337.5 82 202.0 83 133.0 84 64.0 85 55.0 86 46.0 87 31.0 88 16.0 89 9.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 333357.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.57267075088253 #Duplication Level Percentage of deduplicated Percentage of total 1 71.08340218054477 28.12960070343263 2 8.641230029141987 6.8391310165174986 3 3.9383601172799683 4.675542846585818 4 2.781417334348303 4.40272449571851 5 2.3147844620897278 4.580110168876776 6 1.8428806129434285 4.375662463751693 7 1.6688846733894223 4.622955659086362 8 1.4655210365190967 4.639566516532985 9 1.2016623917186264 4.27976911630793 >10 4.971412867677693 27.02003607096809 >50 0.05168245391254806 1.4142044510552212 >100 0.034961659999664864 2.7793839498514035 >500 0.0030401443477969447 0.8842537401323587 >1k 7.600360869492362E-4 1.357058801182722 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4512 1.3535039012230132 No Hit GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 888 0.2663810869428271 No Hit CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 702 0.21058504846155923 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC 690 0.20698530404341292 No Hit CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 660 0.19798594299804714 Illumina Single End Adapter 1 (95% over 21bp) CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 394 0.1181916083958039 No Hit GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC 371 0.11129209826102346 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG 355 0.10649243903682838 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 349 0.10469256682775523 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT 343 0.10289269461868208 No Hit CGTTCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC 340 0.10199275851414549 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9997870151219264E-4 0.0 0.0 0.20638534664038855 0.0 2 2.9997870151219264E-4 0.0 0.0 0.8726380426989684 0.0 3 2.9997870151219264E-4 0.0 0.0 1.2407119094544288 0.0 4 2.9997870151219264E-4 0.0 0.0 1.7497757659206197 0.0 5 2.9997870151219264E-4 0.0 0.0 3.106279454158755 0.0 6 2.9997870151219264E-4 0.0 0.0 4.123807209688112 0.0 7 2.9997870151219264E-4 0.0 0.0 4.994945358879519 0.0 8 2.9997870151219264E-4 0.0 0.0 6.214958737929607 0.0 9 2.9997870151219264E-4 0.0 0.0 6.83111499083565 0.0 10 2.9997870151219264E-4 0.0 0.0 7.967434312163836 0.0 11 2.9997870151219264E-4 0.0 0.0 9.274441514652459 0.0 12 2.9997870151219264E-4 0.0 0.0 10.354064861394841 0.0 13 2.9997870151219264E-4 0.0 0.0 10.788134042482984 0.0 14 2.9997870151219264E-4 0.0 0.0 10.980120411450788 0.0 15 2.9997870151219264E-4 0.0 0.0 11.283998836082638 0.0 16 2.9997870151219264E-4 0.0 0.0 11.813161265550146 0.0 17 2.9997870151219264E-4 0.0 0.0 12.444616432233312 0.0 18 2.9997870151219264E-4 0.0 0.0 13.156165912220233 0.0 19 2.9997870151219264E-4 0.0 0.0 13.5539376704254 0.0 20 2.9997870151219264E-4 0.0 0.0 13.955909130451738 0.0 21 2.9997870151219264E-4 0.0 0.0 14.412776692854807 0.0 22 2.9997870151219264E-4 0.0 0.0 14.90024208281212 0.0 23 2.9997870151219264E-4 0.0 0.0 15.387707472769433 0.0 24 2.9997870151219264E-4 0.0 0.0 15.789078975392748 0.0 25 5.999574030243853E-4 0.0 0.0 16.17395164943289 0.0 26 5.999574030243853E-4 0.0 0.0 16.504828157200837 0.0 27 5.999574030243853E-4 0.0 0.0 16.87170210915025 0.0 28 5.999574030243853E-4 0.0 0.0 17.21667761588927 0.0 29 5.999574030243853E-4 0.0 0.0 17.543654400537562 0.0 30 5.999574030243853E-4 0.0 0.0 17.94682577536995 0.0 31 5.999574030243853E-4 0.0 0.0 18.281002048854532 0.0 32 5.999574030243853E-4 0.0 0.0 18.63497691663892 0.0 33 5.999574030243853E-4 0.0 0.0 18.977852572467356 0.0 34 5.999574030243853E-4 0.0 0.0 19.3258278662215 0.0 35 5.999574030243853E-4 0.0 0.0 19.714300284679787 0.0 36 5.999574030243853E-4 0.0 0.0 20.049076515567396 0.0 37 5.999574030243853E-4 0.0 0.0 20.403051383351784 0.0 38 5.999574030243853E-4 0.0 0.0 20.74232729476207 0.0 39 5.999574030243853E-4 0.0 0.0 21.07590361084363 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGCG 35 1.2084638E-7 45.000004 36 ACCGGTA 20 7.0260727E-4 45.0 41 GCGAATG 20 7.0260727E-4 45.0 1 TACGGGC 25 3.884828E-5 45.0 4 CTGCGAT 20 7.0260727E-4 45.0 18 CGGTCTA 25 3.884828E-5 45.0 31 CGCAATG 20 7.0260727E-4 45.0 2 ATACCGG 20 7.0260727E-4 45.0 2 CTAGACG 30 2.1608485E-6 44.999996 26 CATATTA 30 2.1608485E-6 44.999996 28 TAGGGTG 80 0.0 42.1875 5 CGTTTTT 2030 0.0 41.12069 1 TCGTTCA 45 1.9212166E-8 40.0 16 CTATAGG 45 1.9212166E-8 40.0 2 TGCGTAG 45 1.9212166E-8 40.0 1 CAAACGG 35 6.23495E-6 38.57143 2 AGATCGG 35 6.23495E-6 38.57143 2 TCGATGG 35 6.23495E-6 38.57143 2 CTTGGCG 35 6.23495E-6 38.57143 1 TGTTGCG 35 6.23495E-6 38.57143 1 >>END_MODULE