SRR3551451_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551451_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	193938
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	635	0.32742422836164137	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	351	0.18098567583454506	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTC	195	0.10054759768585836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCACCGG	20	7.01877E-4	45.000004	20
TCTCGGT	20	7.01877E-4	45.000004	45
GTCAACC	20	7.01877E-4	45.000004	16
GGGTTCG	20	7.01877E-4	45.000004	8
AATACGG	20	7.01877E-4	45.000004	2
AGGTATC	25	3.8787788E-5	45.0	7
ACACGGG	25	3.8787788E-5	45.0	3
CACGGGA	35	1.2049532E-7	45.0	4
CGACGGG	45	3.8198777E-10	45.0	3
CGTTGAG	25	3.8787788E-5	45.0	2
ATTACGG	25	3.8787788E-5	45.0	2
GCACGAA	30	2.1561427E-6	44.999996	1
CGTTTTA	185	0.0	43.783783	1
CGTTATT	100	0.0	42.75	1
AGGCGAT	50	1.0713848E-9	40.5	7
ACGGGAG	90	0.0	40.0	5
TGCGGGA	85	0.0	39.705883	4
GGCGATT	40	3.4384357E-7	39.375004	8
ATACGGG	40	3.4384357E-7	39.375004	3
GTGCGGG	75	0.0	39.0	3