SRR3551445_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551445_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	756448
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1841	0.2433742967130589	No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC	1687	0.22301599052413382	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTC	1624	0.2146875925377554	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGC	1559	0.2060948009645078	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCG	1404	0.18560429798214814	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1147	0.1516297220694615	No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT	1128	0.1491179829942045	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	802	0.10602182833453191	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1645137E-6	45.000004	4
AATACGG	30	2.1645137E-6	45.000004	5
GCGAACG	20	7.031756E-4	45.0	1
TAAACGG	50	2.1827873E-11	45.0	2
TACGGGT	45	3.8380676E-10	45.0	4
TCCACCG	20	7.031756E-4	45.0	42
CATCGTT	45	3.8380676E-10	45.0	36
ACGTAAG	25	3.8895363E-5	45.0	1
CGCACGG	35	1.2111923E-7	45.0	2
GGTTACG	25	3.8895363E-5	45.0	1
AATACCG	20	7.031756E-4	45.0	1
ATACCGG	25	3.8895363E-5	45.0	2
CTTACGT	20	7.031756E-4	45.0	22
ACGCGTC	20	7.031756E-4	45.0	27
TCACGAC	85	0.0	42.35294	25
CGGTCTA	85	0.0	42.35294	31
AACGGGC	125	0.0	41.4	4
TAACGCC	60	3.6379788E-12	41.250004	12
TACGGGA	365	0.0	40.684933	4
ACGGGTA	90	0.0	40.0	5