SRR3551444_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551444_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	602891
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	7609	1.2620855179460302	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC	7233	1.1997193522543876	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG	6279	1.0414817935580396	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	2262	0.3751921989215297	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1908	0.3164751173926962	No Hit
GAACTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	1610	0.2670466137328307	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCT	1400	0.23221444672420055	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTC	1141	0.18925477408022345	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1102	0.18278594306433502	Illumina Single End Adapter 1 (95% over 21bp)
GAATATGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTC	1067	0.17698058189623	No Hit
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	983	0.16304771509277796	Illumina Single End Adapter 1 (95% over 22bp)
GAATAATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCG	943	0.15641301661494367	No Hit
GAATAATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGC	929	0.15409087214770165	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTAGGCAGATCGTA	739	0.12257605437798873	No Hit
CGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTG	725	0.1202539099107467	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTT	706	0.11710242813377542	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	45	3.8380676E-10	45.000004	4
CGGCCGT	20	7.0306147E-4	45.0	21
TCCGACG	20	7.0306147E-4	45.0	27
ACATTCG	20	7.0306147E-4	45.0	23
TAGCCGT	20	7.0306147E-4	45.0	44
TCGTCGG	20	7.0306147E-4	45.0	2
TTGCGAC	20	7.0306147E-4	45.0	1
ATGCGAT	25	3.888592E-5	45.0	12
CGGCTAC	25	3.888592E-5	45.0	25
ATCGGTC	25	3.888592E-5	45.0	26
CATCCGA	20	7.0306147E-4	45.0	16
CCGTTAT	20	7.0306147E-4	45.0	24
AATCGCG	20	7.0306147E-4	45.0	19
CAGACGA	20	7.0306147E-4	45.0	3
TAATACG	130	0.0	43.26923	4
AGTACGG	125	0.0	41.4	2
GCGATAT	60	3.6379788E-12	41.250004	9
CGTTTTT	935	0.0	41.14973	1
ACGGGTC	55	6.002665E-11	40.909092	5
ATAACGG	45	1.925764E-8	40.000004	2