SRR3551439_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551439_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346558
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5671	1.6363783262830465	No Hit
GCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	1174	0.338760034395397	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCG	1174	0.338760034395397	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGC	1146	0.33068057871986795	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	870	0.2510402299182244	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTC	852	0.24584629412681283	No Hit
CTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGCT	539	0.15552952175393442	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	443	0.12782853086640622	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	437	0.1260972189359357	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	408	0.11772921127199487	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGGGTTTCGTATGCCGTCTTCTGC	384	0.11080396355011282	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	377	0.10878409963123055	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	370	0.10676423571234829	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACA	20	7.0264586E-4	45.000004	16
CCCCTTG	30	2.1610977E-6	45.000004	37
AGATCGG	20	7.0264586E-4	45.000004	1
CCCTCGT	80	0.0	45.000004	14
CCTAGTG	20	7.0264586E-4	45.000004	19
TGGGTAC	25	3.8851475E-5	45.000004	6
CGTTGCG	25	3.8851475E-5	45.000004	31
TCGGGAT	20	7.0264586E-4	45.000004	5
TGAACCG	20	7.0264586E-4	45.000004	1
CGACCCG	25	3.8851475E-5	45.000004	32
TACGGTG	20	7.0264586E-4	45.000004	33
TAAGTAT	25	3.8851475E-5	45.000004	14
CGCGACC	25	3.8851475E-5	45.000004	10
TCGATCA	20	7.0264586E-4	45.000004	17
TCGATAG	25	3.8851475E-5	45.000004	1
CCTCGAT	20	7.0264586E-4	45.000004	15
GTTACGA	20	7.0264586E-4	45.000004	25
AAACGGC	25	3.8851475E-5	45.000004	6
CTACGAC	20	7.0264586E-4	45.000004	26
TACGACC	20	7.0264586E-4	45.000004	27