SRR3551434_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551434_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	506037
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	8593	1.698097174712521	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	8538	1.6872284042471202	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC	6424	1.2694723903588077	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2301	0.45470983347067506	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	2070	0.4090609975159919	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT	1551	0.30649932712430117	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT	1115	0.22033961943494249	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC	1058	0.20907562095261809	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA	1031	0.2037400427241486	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	785	0.15512699664253798	No Hit
GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	686	0.13556320980481665	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	653	0.12904194752557618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATGG	30	2.163084E-6	45.000004	2
CGACGGT	20	7.029539E-4	45.0	28
CGTTCCA	20	7.029539E-4	45.0	22
GCGCACA	20	7.029539E-4	45.0	33
TCGGCAC	20	7.029539E-4	45.0	28
TCGTGCG	35	1.2101191E-7	45.0	1
GTATGCG	25	3.8877006E-5	45.0	1
CATCGCG	20	7.029539E-4	45.0	30
ACGGTCT	20	7.029539E-4	45.0	30
ACGGGAT	150	0.0	43.5	5
ACGGCTG	1125	0.0	42.6	8
TACGGCT	1015	0.0	42.3399	7
CGGCTGT	1125	0.0	42.0	9
CGGGACC	70	0.0	41.785713	6
TGATACC	930	0.0	41.612904	4
CGAATAT	115	0.0	41.086956	14
GATACCT	940	0.0	40.93085	5
TATGCGG	55	6.002665E-11	40.909092	2
CGTTAGG	55	6.002665E-11	40.909092	2
TCGTTGA	50	1.0786607E-9	40.5	24