##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551434_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 506037 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.128561745485015 31.0 31.0 33.0 28.0 34.0 2 31.16303155698101 31.0 31.0 34.0 28.0 34.0 3 30.97593061376935 31.0 31.0 34.0 28.0 34.0 4 34.938838464381064 35.0 35.0 37.0 32.0 37.0 5 35.133717494965786 35.0 35.0 37.0 33.0 37.0 6 35.08640277291977 36.0 35.0 37.0 32.0 37.0 7 31.05047457004132 35.0 35.0 37.0 0.0 37.0 8 32.94234611303126 35.0 35.0 37.0 17.0 37.0 9 36.03579975377295 38.0 34.0 39.0 32.0 39.0 10 36.01276784108672 37.0 35.0 39.0 32.0 39.0 11 36.250793914278994 37.0 35.0 39.0 32.0 39.0 12 36.35228056446466 38.0 35.0 39.0 32.0 39.0 13 36.209998478372135 38.0 35.0 39.0 32.0 39.0 14 37.375543685540784 39.0 36.0 40.0 32.0 41.0 15 37.42621982187073 39.0 36.0 41.0 32.0 41.0 16 37.5357869088624 39.0 36.0 41.0 33.0 41.0 17 37.28389030841618 39.0 36.0 40.0 32.0 41.0 18 37.25595361603993 39.0 36.0 40.0 32.0 41.0 19 37.0729215452625 39.0 36.0 40.0 31.0 41.0 20 36.95161025774795 39.0 35.0 40.0 31.0 41.0 21 37.14207459138363 39.0 35.0 40.0 32.0 41.0 22 37.19629592302539 39.0 35.0 40.0 32.0 41.0 23 37.26072006592403 39.0 35.0 40.0 32.0 41.0 24 37.165566944709575 39.0 35.0 40.0 32.0 41.0 25 36.962726045723926 39.0 35.0 40.0 31.0 41.0 26 36.84143056733006 39.0 35.0 40.0 31.0 41.0 27 36.87729948600597 39.0 35.0 40.0 31.0 41.0 28 36.8376482352081 39.0 35.0 40.0 31.0 41.0 29 36.787462181619134 39.0 35.0 40.0 31.0 41.0 30 36.624681594428864 39.0 35.0 40.0 30.0 41.0 31 36.605716578036784 39.0 35.0 40.0 30.0 41.0 32 36.45809496143563 39.0 35.0 40.0 30.0 41.0 33 36.32243294462658 39.0 35.0 40.0 30.0 41.0 34 36.28004276367143 39.0 35.0 40.0 30.0 41.0 35 36.25207445305383 39.0 35.0 40.0 30.0 41.0 36 36.09593764882805 39.0 35.0 40.0 30.0 41.0 37 36.09839201481314 39.0 35.0 40.0 30.0 41.0 38 35.86936923584639 38.0 35.0 40.0 29.0 41.0 39 35.8796076176248 38.0 35.0 40.0 29.0 41.0 40 35.76927971670056 38.0 35.0 40.0 28.0 41.0 41 35.590146570310075 38.0 35.0 40.0 27.0 41.0 42 35.626825706420675 38.0 35.0 40.0 28.0 41.0 43 35.60933884281189 38.0 35.0 40.0 28.0 41.0 44 35.48121184814549 38.0 34.0 40.0 27.0 41.0 45 35.401109009815485 38.0 34.0 40.0 27.0 41.0 46 35.239782861727505 38.0 34.0 40.0 26.0 41.0 47 35.08561231688592 38.0 34.0 40.0 26.0 41.0 48 35.038712584257674 38.0 34.0 40.0 26.0 41.0 49 34.95046607263896 38.0 34.0 40.0 26.0 41.0 50 34.81917132541692 37.0 34.0 40.0 26.0 41.0 51 33.100907641140864 36.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 9.0 9 33.0 10 38.0 11 32.0 12 15.0 13 18.0 14 29.0 15 31.0 16 57.0 17 145.0 18 366.0 19 583.0 20 1013.0 21 1389.0 22 2005.0 23 2743.0 24 3730.0 25 4816.0 26 6141.0 27 7152.0 28 7947.0 29 9439.0 30 11716.0 31 14731.0 32 19042.0 33 26836.0 34 40023.0 35 43460.0 36 49382.0 37 73595.0 38 98757.0 39 80761.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.56154194258523 19.598566903210635 21.86519958026785 10.974691573936294 2 31.274985821194896 30.276442236437255 22.737072585601446 15.711499356766403 3 31.56587364165071 29.119609830901695 25.072079709586454 14.242436817861146 4 27.68473451546033 23.59946011852888 31.38821864804352 17.327586717967264 5 29.99326136231145 27.891043540294486 23.273989846592244 18.84170525080182 6 25.313168799909885 38.48117825376406 23.747275396858335 12.458377549467727 7 65.30530376237311 17.60879145200845 13.549799718202424 3.536105067416019 8 74.10801976930541 11.578995211812575 10.019227843023335 4.2937571758586826 9 68.48669168460015 8.221137980029129 10.867980009366903 12.42419032600383 10 42.19296217470264 25.6299440554742 18.341939423401847 13.835154346421309 11 33.203303315765446 24.891262891843876 24.67566600861202 17.22976778377866 12 31.10523538792618 21.05221554945587 27.582765687094025 20.259783375523924 13 25.054887290850274 23.558356404768823 32.1002219205315 19.286534383849403 14 20.979295980333454 28.7188486217411 27.317370073729784 22.98448532419566 15 18.57018360317526 26.706347559565803 35.6209130952875 19.102555741971436 16 21.431239217685665 25.860757217357623 30.03555076012228 22.67245280483443 17 21.220582684665352 25.258824947582887 31.629900580392345 21.890691787359422 18 21.527674853815036 26.868588660512966 29.184427225677172 22.419309259994822 19 23.76960577981452 28.444362763987613 25.9965180411709 21.789513415026963 20 26.49450534249472 26.283651195465946 30.04365293446922 17.17819052757012 21 25.24222537087209 30.088511314390054 26.26072797048437 18.408535344253483 22 22.99318034056798 24.2310344895729 28.728334094147268 24.047451075711855 23 22.940417400308675 29.804737598238862 28.19991423552033 19.054930765932134 24 24.282414131772974 24.998962526455575 27.469928088262318 23.24869525350913 25 21.282831097330828 31.403830154712008 25.94553362698775 21.367805120969415 26 22.028823979274243 26.99091173175084 28.30148783586971 22.678776453105208 27 24.19072123184668 29.29291731632272 25.78368775405751 20.732673697773087 28 20.133903252133738 28.339627339502844 31.149500925821627 20.37696848254179 29 24.970110881220148 26.543513616593252 27.38475645061527 21.101619051571326 30 23.707554981157504 28.321051622707433 28.553643310667002 19.417750085468057 31 25.27759827838676 25.85502641111223 26.819580386414433 22.047794924086578 32 25.57085746694412 31.50105624687523 24.992441264176335 17.93564502200432 33 23.679493791955924 28.243982159407317 25.13096868410808 22.94555536452868 34 26.829263472829062 26.999606748123163 26.97668352314159 19.19444625590619 35 23.995280977477933 28.111580773737888 25.17602467803738 22.717113570746804 36 24.08460250930268 28.66272624333794 26.013512845898617 21.239158401460763 37 24.26502409902833 30.207672561492537 26.86700774844527 18.660295591033858 38 21.162879394194494 30.56080879461383 25.65642433260809 22.619887478583582 39 25.543389119767923 28.02364253997237 25.74495540839899 20.688012931860715 40 22.940812628325595 29.412276177433665 27.876617717676773 19.770293476563968 41 22.05451380037428 27.154733744765696 27.026087025257045 23.764665429602974 42 20.485656187195797 29.213871712937987 29.07435622296393 21.22611587690228 43 23.132498216533573 26.233852465333563 25.51928021073558 25.114369107397284 44 23.202651189537523 26.461701417090055 27.731569035465785 22.604078357906634 45 22.116564599031296 25.375021984558444 27.040315233866295 25.46809818254396 46 24.413036991366244 29.289755492187332 24.587727774846506 21.70947974159992 47 20.664694478862216 26.477115309750076 31.932052399330484 20.92613781205722 48 23.048512262937297 27.145050658351067 26.869379116546817 22.937057962164822 49 20.667461074980682 25.58864272770568 30.716923861298678 23.026972336014957 50 20.31985803409632 25.796927892624456 29.196481680193347 24.68673239308588 51 20.797095864531645 25.448929623723167 26.456563452870046 27.29741105887514 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 123.0 1 510.0 2 897.0 3 2651.0 4 4405.0 5 3073.5 6 1742.0 7 1605.0 8 1468.0 9 1428.0 10 1388.0 11 1338.5 12 1289.0 13 1271.5 14 1254.0 15 1211.0 16 1168.0 17 1346.5 18 1525.0 19 1576.5 20 1628.0 21 1817.0 22 2006.0 23 2355.0 24 2704.0 25 3213.5 26 4557.5 27 5392.0 28 6635.5 29 7879.0 30 8621.5 31 9364.0 32 10853.5 33 12343.0 34 14099.0 35 15855.0 36 16537.5 37 17220.0 38 18868.0 39 20516.0 40 21926.5 41 23337.0 42 25479.0 43 27621.0 44 29856.5 45 32092.0 46 48606.5 47 65121.0 48 51859.5 49 38598.0 50 36988.0 51 35378.0 52 31443.5 53 27509.0 54 25928.0 55 24347.0 56 24111.5 57 23876.0 58 22898.5 59 21921.0 60 22235.5 61 22550.0 62 20953.0 63 19356.0 64 16179.5 65 13003.0 66 9759.5 67 6516.0 68 5403.5 69 4291.0 70 3567.5 71 2844.0 72 2249.0 73 1654.0 74 1333.0 75 773.5 76 535.0 77 392.5 78 250.0 79 211.5 80 173.0 81 119.5 82 66.0 83 60.5 84 55.0 85 41.0 86 27.0 87 18.5 88 10.0 89 5.5 90 1.0 91 1.5 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 506037.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.187700541805718 #Duplication Level Percentage of deduplicated Percentage of total 1 72.95107381486446 21.29274096711428 2 8.439392041874079 4.926528953462379 3 3.6057218338027837 3.1572818736625865 4 2.2293683106897704 2.6028053859921725 5 1.5473019678459212 2.2581093242616723 6 1.1224396393149954 1.9656859241147104 7 0.9132529738907951 1.8659028024586632 8 0.7242419993293698 1.6911166876979447 9 0.6337124700284676 1.6646948824319048 >10 7.654632647080588 47.105480953349186 >50 0.1334692172421204 2.3698265979815267 >100 0.0372629794330793 2.2171642036522763 >500 0.002032526150895235 0.42001933362089144 >1k 0.00406505230179047 1.804659340218576 >5k 0.002032526150895235 4.6579827699812135 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC 8593 1.698097174712521 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG 8538 1.6872284042471202 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTC 6424 1.2694723903588077 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2301 0.45470983347067506 No Hit GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC 2070 0.4090609975159919 TruSeq Adapter, Index 14 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCT 1551 0.30649932712430117 No Hit GAACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCT 1115 0.22033961943494249 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTC 1058 0.20907562095261809 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTA 1031 0.2037400427241486 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 785 0.15512699664253798 No Hit GAATGAAACGGCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC 686 0.13556320980481665 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG 653 0.12904194752557618 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09090244389244265 0.0 2 0.0 0.0 0.0 0.7256386390718466 0.0 3 0.0 0.0 0.0 0.8469736402674113 0.0 4 0.0 0.0 0.0 1.232716184784907 0.0 5 0.0 0.0 0.0 3.063609973183779 0.0 6 0.0 0.0 0.0 3.4072607338989047 0.0 7 0.0 0.0 0.0 3.966310763837427 0.0 8 0.0 0.0 0.0 4.587806820449888 0.0 9 0.0 0.0 0.0 4.735226870762415 0.0 10 0.0 0.0 0.0 7.043951331621996 0.0 11 0.0 0.0 0.0 7.57948529455356 0.0 12 0.0 0.0 0.0 10.001047354244848 0.0 13 0.0 0.0 0.0 10.270592861786787 0.0 14 0.0 0.0 0.0 10.404970387540832 0.0 15 0.0 0.0 0.0 10.813438543031438 0.0 16 0.0 0.0 0.0 11.200366771599706 0.0 17 0.0 0.0 0.0 11.578007141770266 0.0 18 0.0 0.0 0.0 11.963947300296223 0.0 19 0.0 0.0 0.0 12.333090268102925 0.0 20 0.0 0.0 0.0 12.609552265941028 0.0 21 0.0 0.0 0.0 12.935220151886126 0.0 22 0.0 0.0 0.0 13.282625578762028 0.0 23 0.0 0.0 0.0 13.608293464707126 0.0 24 0.0 0.0 0.0 13.86756304380905 0.0 25 0.0 0.0 0.0 14.109442590166331 0.0 26 0.0 0.0 0.0 14.340453366058213 0.0 27 0.0 0.0 0.0 14.5916207708132 0.0 28 0.0 0.0 0.0 14.833697931178945 0.0 29 0.0 0.0 0.0 15.078739301671616 0.0 30 0.0 0.0 0.0 15.363303473856655 0.0 31 0.0 0.0 0.0 15.639567857686295 0.0 32 0.0 0.0 0.0 15.915634627507474 0.0 33 0.0 0.0 0.0 16.162849752093226 0.0 34 0.0 0.0 0.0 16.430023891533622 0.0 35 0.0 0.0 0.0 16.713797607684814 0.0 36 0.0 0.0 0.0 17.01219476046218 0.0 37 0.0 0.0 0.0 17.295178020579524 0.0 38 0.0 0.0 0.0 17.583694472933797 0.0 39 0.0 0.0 0.0 17.882289239719626 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATGG 30 2.163084E-6 45.000004 2 CGACGGT 20 7.029539E-4 45.0 28 CGTTCCA 20 7.029539E-4 45.0 22 GCGCACA 20 7.029539E-4 45.0 33 TCGGCAC 20 7.029539E-4 45.0 28 TCGTGCG 35 1.2101191E-7 45.0 1 GTATGCG 25 3.8877006E-5 45.0 1 CATCGCG 20 7.029539E-4 45.0 30 ACGGTCT 20 7.029539E-4 45.0 30 ACGGGAT 150 0.0 43.5 5 ACGGCTG 1125 0.0 42.6 8 TACGGCT 1015 0.0 42.3399 7 CGGCTGT 1125 0.0 42.0 9 CGGGACC 70 0.0 41.785713 6 TGATACC 930 0.0 41.612904 4 CGAATAT 115 0.0 41.086956 14 GATACCT 940 0.0 40.93085 5 TATGCGG 55 6.002665E-11 40.909092 2 CGTTAGG 55 6.002665E-11 40.909092 2 TCGTTGA 50 1.0786607E-9 40.5 24 >>END_MODULE